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Does fastp remove primer sequences for aplicon sequencing results? #532

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timz0605 opened this issue Nov 14, 2023 · 0 comments
Open

Does fastp remove primer sequences for aplicon sequencing results? #532

timz0605 opened this issue Nov 14, 2023 · 0 comments

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@timz0605
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Hello, I've been going through the documentation and trying to find options for primer trimming. I am unsure whether the adapter trimming option could also trim primers.

Another thing I noticed is that the adapter sequence only takes ATGC but could not recognize other letters. For example, if I am using the following primers, is the program also able to trim the sequence?

Forward: 5’-GGWACWGGWTGAACWGTWTAYCCYCC-3’
Reverse: 5’-TAIACYTCIGGRTGICCRAARAAYCA-3’

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