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output files are truncated #30

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hhg7 opened this issue Dec 7, 2017 · 0 comments
Open

output files are truncated #30

hhg7 opened this issue Dec 7, 2017 · 0 comments

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@hhg7
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hhg7 commented Dec 7, 2017 •
edited

Hello,

I'm processing some files that were output by afterQC, but I'm double checking with FastQC, and it looks like the output from AfterQC is truncated:

Failed to process file SRR5335803_1.bz2.good.fq.bz2
uk.ac.babraham.FastQC.Sequence.SequenceFormatException: Ran out of data in the middle of a fastq entry.  Your file is probably truncated

perhaps afterQC isn't compatible with reading bz2 format?

-Dave
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