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Make utils for generating dgl or pyg graphs from processed data #221

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RemyLau opened this issue Feb 26, 2023 · 0 comments
Open

Make utils for generating dgl or pyg graphs from processed data #221

RemyLau opened this issue Feb 26, 2023 · 0 comments
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enhancement New feature or request

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@RemyLau
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RemyLau commented Feb 26, 2023

Some current graph transforms methods directly save the processed dgl graphs in .uns. The limitations for doing so are

  • Limits the choice of the framework (dgl vs. pyg) to use in the downstream model.
  • .uns is not a good place to store large data

Solution

  • Create utils that generate dgl or pyg graphs given raw feature, edge data, or adjacency matrix.
  • Pass the raw data to method's fit function and construct the graph using the appropriate framework within the fit function.
@RemyLau RemyLau added the enhancement New feature or request label Feb 26, 2023
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