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Process 'Percolator' finished, exit code: 134 #1519
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Not sure if this helps, but I also encountered an error when using peptideprophet
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Regarding the PeptideProphet error, the FragPipe executable files have been corrupted. Please download a new one and start from scratch. Best, Fengchao |
I am also having the same issues running the DIA_DIA-Umpire_SpecLib_Quant workflow. (I have also tried this without the workflow loaded but individually selected the tabs with the same parameters). This is a recent issue, where the same samples (small subset) I have successfully ran previously are suddenly terminating at the percolator step:
Any help with this would be very appreciated, although I note that the crosslinked post to percolator has not gotten any replies since this issue was first raised. Could the program have somehow become |
@BaylorSci , thanks for the feedback. We are still waiting for the Percolator to reply the ticket percolator/percolator#375. They normally replies promptly. Maybe they are busy. I guess we'd better wait a little longer. Best, Fengchao |
Any update on this issue? Newest run example with fail outlined above:
Seems to be caused by something missing in the pepXML file (not sure what). I systematically removed samples until I got it to complete (removing samples below a certain size threshold, for me below 600 kb) |
I am using DIA_DIA-Umpire_SpecLib_Quant process to analyze the data, and I have only DIA and no DDA type in my data, and the following error message is reported
(If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the zipped file by drag & drop here.)
Here is the full log
Uploading slurm-6804377.out.txt…
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