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[pygenomeworks] Support reading compressed PAF as input #559

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edawson opened this issue Sep 15, 2020 · 0 comments
Open

[pygenomeworks] Support reading compressed PAF as input #559

edawson opened this issue Sep 15, 2020 · 0 comments
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enhancement New feature or request

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@edawson
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edawson commented Sep 15, 2020

Currently, the evaluate_paf script in pygenomeworks (and the backing readers) require input to be raw text. However, we often use gzip-compressed PAF to save space, and miniasm natively supports reading it. It would be nice to modify our PAF reader to natively support gzipped PAF.
@edawson edawson added the enhancement New feature or request label Sep 15, 2020
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@edawson