After running setup.py, we didn't find install.sh to proceed.

[minn333]

Dear author,
As the title, we followed your instruction to install MutpredSuite, however, we didn't find install.sh. Could you kindly solve the problem. Thanks a lot!

[trberg]

Hi @minn333, I see the install.sh file in the github repo, did the file not make to your local environment when you cloned the repo?

[trberg]

If you're having issues, you can create a bash file called install.sh, and paste the following code into the file.

#!/bin/sh
# script for execution of deployed applications
#
#Installs the needed packages and programs for MutPredMerge

while true; do
    read -p "The installation of the MutPred Suite takes 90 Gb? Do you wish to continue? " yn
    case $yn in
        [Yy]* ) 
            # download and unzip mutpred2
            wget --directory-prefix=tools/ http://mutpred.mutdb.org/mutpred2.0_linux_x86_64.tar.gz;
            tar -xvzf tools/mutpred2.0_linux_x86_64.tar.gz;
            rm tools/mutpred2.0_linux_x86_64.tar.gz;
            printf "[NCBI]\nDATA=$(pwd)/tools/mutpred2.0/blast-2.2.18/data/" > tools/mutpred2.0/.ncbirc;
            source tools/mutpred2.0/.ncbirc;
            echo "ignore this error, all is fine";

            #download and unzip mutpred LOF
            wget --directory-prefix=tools/ http://mutpredlof.cs.indiana.edu/MutPredLOF_compiled.tar.gz;
            tar -xvzf tools/MutPredLOF_compiled.tar.gz;
            rm tools/MutPredLOF_compiled.tar.gz;
            cp -r tools/mutpred2.0/v91/ tools/MutPredLOF/;

            #download and unzip mutpred indels
            wget --directory-prefix=tools/ http://mutpredindel.cs.indiana.edu/MutPredIndel_compiled.tar.gz;
            tar -xvzf tools/MutPredIndel_compiled.tar.gz;
            rm tools/MutPredIndel_compiled.tar.gz;
            cp -r tools/mutpred2.0/v91/ tools/MutPredIndel_compiled/;
            break;;
        [Nn]* ) exit;;
        * ) echo "Please answer yes or no.";;
    esac
done

Hope this helps!

[minn333]

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