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EROR #293

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yuls2707 opened this issue Dec 11, 2023 · 1 comment
Open

EROR #293

yuls2707 opened this issue Dec 11, 2023 · 1 comment
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@yuls2707
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yuls2707 commented Dec 11, 2023

Executing file "C:\Users\ACER\Downloads\EAS BIOSISTEMATIKA.nexus"
DOS line termination
Longest line length = 691
Parsing file
Expecting NEXUS formatted file
Reading taxa block
Allocated taxon set
Defining new set of 8 taxa
Exiting taxa block
Reading characters block
Allocated matrix
Defining new character matrix with 677 characters
Missing data coded as ?
Gaps coded as -
Matching characters coded as .
No valid match for argument "nucleotide"
Invalid data type argument
Error when setting parameter "Datatype" (2)
The error occurred when reading char. 52-61 on line 18
in the file 'C:\Users\ACER\Downloads\EAS BIOSISTEMATIKA.nexus'

Returning execution to command line ...

Error in command "Execute"

WHAT CAN I DO WITH THIS PROBLEM ?

@nylander
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nylander commented Feb 2, 2024

Dear @yuls2707

WHAT CAN I DO WITH THIS PROBLEM ?

I suggest by start looking at the syntax in the infile EAS BIOSISTEMATIKA.nexus.

MrBayes sees an incorrect keyword "nucleotide" which it takes as a argument to the nexus token DATATYPE. My guess is that you may have to change, for example, datatype=nucleotide to datatype=dna. Please see the nexus files in the examples folder for the correct syntax.

Yours
Johan

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