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get_masks
interface changed from cellpose 1.x to 2.x
#41
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Hi, I've encountered the same problem.
If it can be of use, I'm copying the full report Full report
(base) PS C:> conda activate cellpose_napari
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I can confirm this on cellpose 2.2.3
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When clicking "recompute last masks with new cellprob + model match", I get the error:
Environment:
cellpose 1.0.2
cellpose-napari 0.1.5
napari 0.4.16
napari-plugin-engine 0.2.0
This is caused by the removal of the
flows
argument in theget_masks
function in the transition from cellpose 1.x to 2.0. However, the requirementscellpose>=0.6.2
currently pull the latest package version. The current code would need to specify an upper limitcellpose>=0.6.2,<2
, or be updated to the new interface.Workaround:
Install
cellpose==1.0.2
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