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.gitignore
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.gitignore
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# Hidden files
.Rhistory
.DS_Store
.Rproj.user/
tax-scripts/.RData
.Rproj.user
.RData
TaxAss.Rproj
# Other Databases
FreshTrain-files/gg_13_5.fasta
FreshTrain-files/gg_13_5.taxonomy
# Expanded FreshTrain Folders and unreleased FreshTrain versions
FreshTrain-files/outdated-versions/FreshTrain18Aug2016
FreshTrain-files/outdated-versions/FreshTrain11Feb2016
FreshTrain-files/outdated-versions/FreshTrain11Feb2016.zip
FreshTrain-files/outdated-versions/FreshTrain25Jan2018Greengenes13_5
FreshTrain-files/outdated-versions/FreshTrain25Mar2018SILVAv128
FreshTrain-files/outdated-versions/FreshTrain25Mar2018SILVAv128.zip
FreshTrain-files/outdated-versions/FreshTrain25Mar2018SILVAv132
FreshTrain-files/outdated-versions/FreshTrain25Mar2018SILVAv132.zip
FreshTrain-files/outdated-versions/FreshTrain30Apr2018SILVAv128
FreshTrain-files/outdated-versions/FreshTrain30Apr2018SILVAv132
FreshTrain-files/FreshTrain15Jun2020greengenes13_8
FreshTrain-files/FreshTrain15Jun2020silva128
FreshTrain-files/FreshTrain15Jun2020silva132
FreshTrain-files/FreshTrain15Jun2020silva138
# Data Directories
processedData
rawData
plots
# Other files
Taxonomy_Assignment_Scripts.Rproj
tax-scripts/tax-scripts.Rproj
workflow-flowchart.pptx
Rplot*.pdf
mothur.*
# Marathonas Analysis Folders
arb-scripts/Marathonas_test/v4_mara/
arb-scripts/Marathonas_test/v4v5_mara/
arb-scripts/Marathonas_test/v3v4_mara/
arb-scripts/Marathonas_test/v6_mara/
arb-scripts/Marathonas_test/with_greengenes/
# temp hide
arb-scripts/Marathonas_test/add-tax-scripts-and-databases