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Does AlphaPeptDeep support pre-digested FASTA files? #164

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Kokoushin opened this issue May 10, 2024 · 1 comment
Closed

Does AlphaPeptDeep support pre-digested FASTA files? #164

Kokoushin opened this issue May 10, 2024 · 1 comment

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@Kokoushin
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Hi,

I have a pre-digested (trypsin) FASTA file and I want to create an in silico library.
I tried using the GUI, but it failed.
Here is my FASTA file.
diann_001.txt

Best regards,
Ko
@GeorgWa
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GeorgWa commented May 11, 2024

You can try setting the enzyme to no-cleave which should give you full protein peptides.

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@GeorgWa @Kokoushin