Update to new Fragpipe output

[PatrickvanZalm]

Hi all,

Very nice tool, I really like it!!

Fragpipe's IonQuant has recently been updated which now produces combined_peptide.tsv and combined_peptide_modified.tsv. I was wondering if this recent update can be added? The update also causes the combined_peptide.tsv not to work anymore.

Cheers,
Patrick

[ibludau]

Ho Patrick,

thanks a lot for letting us know.
Could you send us a small example file so we can locally test it and update AlphaMap?

Thanks a lot!
Cheers,
Isabell

[PatrickvanZalm]

Hi Isabell,

Of course. See attached the combined_peptide.tsv and combined_modified_peptide.tsv files of a small dataset.

Hope it helps.
drive-download-20220223T070351Z-001.zip

Best,
Patrick