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Hi,
I have a problem with the Enrichr analysis. When I run it as:
# Initialize results results['enrichr'] = {} # Loop through signatures for label, signature in signatures.items(): # Run analysis results['enrichr'][label] = analyze(signature=signature, tool='enrichr', signature_label=label, geneset_size=500) # Display results plot(results['enrichr'][label])
I get the following error:
Exception Traceback (most recent call last) <ipython-input-62-6cd0bc5bc6ce> in <module>() 6 7 # Run analysis ----> 8 results['enrichr'][label] = analyze(signature=signature, tool='enrichr', signature_label=label, geneset_size=500) 9 10 # Display results <ipython-input-1-835cab3f0c8d> in analyze(tool, **kwargs) 69 kwargs['dataset'][normalization_method] = normalize_dataset(method = normalization_method, dataset=kwargs['dataset']) 70 ---> 71 return {'results': eval(tool).run(**kwargs), 'tool': tool} 72 73 # Plot /library/v1.0.5/analysis_tools/enrichr/enrichr.py in run(signature, geneset_size, libraries, signature_label) 60 61 # Submit to Enrichr ---> 62 enrichr_ids = {geneset_label: submit_enrichr_geneset(geneset=geneset, label=signature_label+', '+geneset_label+', from BioJupies') for geneset_label, geneset in genesets.items()} 63 enrichr_ids['signature_label'] = signature_label 64 return enrichr_ids /library/v1.0.5/analysis_tools/enrichr/enrichr.py in <dictcomp>(.0) 60 61 # Submit to Enrichr ---> 62 enrichr_ids = {geneset_label: submit_enrichr_geneset(geneset=geneset, label=signature_label+', '+geneset_label+', from BioJupies') for geneset_label, geneset in genesets.items()} 63 enrichr_ids['signature_label'] = signature_label 64 return enrichr_ids /library/v1.0.5/analysis_tools/enrichr/enrichr.py in submit_enrichr_geneset(geneset, label) 47 response = requests.post(ENRICHR_URL, files=payload) 48 if not response.ok: ---> 49 raise Exception('Error analyzing gene list') 50 time.sleep(0.5) 51 data = json.loads(response.text) Exception: Error analyzing gene list
I can I fix it?
Thanks in advance! Davide
The text was updated successfully, but these errors were encountered:
Any news on this issue? Could Biojupies use the new enrichr server to overcome this error?
Thanks, Davide
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Hi,
I have a problem with the Enrichr analysis. When I run it as:
I get the following error:
I can I fix it?
Thanks in advance!
Davide
The text was updated successfully, but these errors were encountered: