"Image Exception : #63

[Meryam1985]

Hi
I have an error message "Image Exception : #63 :: No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_*"
I want to know if a file. sub_acq-AP_dwibval conteine only 1000 is for an only b0 image or not...
how to differanciate...
BECAUSE I NOTED THAT THERE ARE OTHER IMAGES whose sub_acq-AP_dwi.val has the following values.
0 0 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000
knowing that I had the following error.
(base) besma@besma-ThinkCentre-M720t:/media/besma/docc/freesurfer-linux-centos6_x86_64-7.1.1/freesurfer/adsub/sub-002S1155/ses-001$ sudo docker run --rm \

-v /media/besma/docc/freesurfer-linux-centos6_x86_64-7.1.1/freesurfer/adsub/sub-002S1155/ses-001/dwi/:/INPUTS/
-v /media/besma/docc/freesurfer-linux-centos6_x86_64-7.1.1/freesurfer/adsub/sub-002S1155/ses-001/dwi/out:/OUTPUTS/
-v /media/besma/docc/freesurfer-linux-centos6_x86_64-7.1.1/freesurfer/license.txt:/extra/freesurfer/license.txt
--user $(id -u):$(id -g)
justinblaber/synb0_25iso
[sudo] password for besma:

---

INPUTS:
Distorted b0 path: /INPUTS/b0.nii.gz
T1 path: /INPUTS/T1.nii.gz
T1 atlas path: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz
T1 2.5 iso atlas path: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz
Results path: /OUTPUTS

Job directory path: /tmp/tmp.hh0vCEw4zT

Making results directory...

Normalizing T1
normalize_T1.sh /INPUTS/T1.nii.gz /tmp/tmp.hh0vCEw4zT/T1_N3.nii.gz /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz

INPUTS:
T1 path: /INPUTS/T1.nii.gz
T1 N3 path: /tmp/tmp.hh0vCEw4zT/T1_N3.nii.gz
T1 normalized path: /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz

Job directory path: /tmp/tmp.MLt16FY2Ij

mri_convert /tmp/tmp.MLt16FY2Ij/T1.nii.gz /tmp/tmp.MLt16FY2Ij/T1.mgz
mri_convert.bin /tmp/tmp.MLt16FY2Ij/T1.nii.gz /tmp/tmp.MLt16FY2Ij/T1.mgz
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /tmp/tmp.MLt16FY2Ij/T1.nii.gz...
TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (1, 0, 0)
j_ras = (0, 1, 0)
k_ras = (0, 0, 1)
writing to /tmp/tmp.MLt16FY2Ij/T1.mgz...

mri_nu_correct.mni --i /tmp/tmp.MLt16FY2Ij/T1.mgz --o /tmp/tmp.MLt16FY2Ij/T1_N3.mgz --n 2
/
/extra/freesurfer/bin/mri_nu_correct.mni
--i /tmp/tmp.MLt16FY2Ij/T1.mgz --o /tmp/tmp.MLt16FY2Ij/T1_N3.mgz --n 2
nIters 2
$Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
Linux 67a8343f93b7 5.11.0-27-generic #29~20.04.1-Ubuntu SMP Wed Aug 11 15:58:17 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Sun Sep 5 13:47:45 UTC 2021
Program nu_correct, built from:
Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
/usr/bin/bc
tmpdir is /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23
/
mri_convert /tmp/tmp.MLt16FY2Ij/T1.mgz /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu0.mnc -odt float
mri_convert.bin /tmp/tmp.MLt16FY2Ij/T1.mgz /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu0.mnc -odt float
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /tmp/tmp.MLt16FY2Ij/T1.mgz...
TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (1, 0, 0)
j_ras = (0, 1, 0)
k_ras = (0, 0, 1)
writing to /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu0.mnc...

---

Iteration 1 Sun Sep 5 13:47:46 UTC 2021
nu_correct -clobber /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu0.mnc /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu1.mnc -tmpdir /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/0/
[@67a8343f93b7:/] [2021-09-05 13:47:46] running:
/extra/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/0/ /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu0.mnc /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu1.imp

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Number of iterations: 46
CV of field change: 0.000975643

---

Iteration 2 Sun Sep 5 13:48:19 UTC 2021
nu_correct -clobber /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu1.mnc /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc -tmpdir /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/1/
[@67a8343f93b7:/] [2021-09-05 13:48:19] running:
/extra/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/1/ /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu1.mnc /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.imp

Processing:.............................................Done
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Number of iterations: 27
CV of field change: 0.000978921

mri_binarize --i /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc --min -1 --o /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz

$Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $
cwd /
cmdline mri_binarize.bin --i /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc --min -1 --o /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz
sysname Linux
hostname 67a8343f93b7
machine x86_64
user UNKNOWN

input /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc
frame 0
nErode3d 0
nErode2d 0
output /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz
Binarizing based on threshold
min -1
max +infinity
binval 1
binvalnot 0
fstart = 0, fend = 0, nframes = 1
Found 10813440 values in range
Counting number of voxels in first frame
Found 10813440 voxels in final mask
Count: 10813440 14434198.710938 10813440 100.000000
mri_binarize done
mri_segstats --id 1 --seg /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz --i /tmp/tmp.MLt16FY2Ij/T1.mgz --sum /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/sum.junk --avgwf /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/input.mean.dat

$Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
cwd
cmdline mri_segstats --id 1 --seg /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz --i /tmp/tmp.MLt16FY2Ij/T1.mgz --sum /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/sum.junk --avgwf /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/input.mean.dat
sysname Linux
hostname 67a8343f93b7
machine x86_64
user UNKNOWN
UseRobust 0
Loading /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz
Loading /tmp/tmp.MLt16FY2Ij/T1.mgz
Voxel Volume is 1.33484 mm^3
Generating list of segmentation ids
Found 1 segmentations
Computing statistics for each segmentation

Reporting on 1 segmentations
Using PrintSegStat
Computing spatial average of each frame
0
Writing to /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/input.mean.dat
mri_segstats done
mri_segstats --id 1 --seg /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz --i /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc --sum /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/sum.junk --avgwf /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/output.mean.dat

$Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
cwd
cmdline mri_segstats --id 1 --seg /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz --i /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc --sum /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/sum.junk --avgwf /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/output.mean.dat
sysname Linux
hostname 67a8343f93b7
machine x86_64
user UNKNOWN
UseRobust 0
Loading /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/ones.mgz
Loading /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc
Voxel Volume is 1.33484 mm^3
Generating list of segmentation ids
Found 1 segmentations
Computing statistics for each segmentation

Reporting on 1 segmentations
Using PrintSegStat
Computing spatial average of each frame
0
Writing to /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/output.mean.dat
mri_segstats done
mris_calc -o /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc mul 1.04810600101798779476
Saving result to '/tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc' (type = MINC ) [ ok ]
mri_convert /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc /tmp/tmp.MLt16FY2Ij/T1_N3.mgz --like /tmp/tmp.MLt16FY2Ij/T1.mgz --conform
mri_convert.bin /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc /tmp/tmp.MLt16FY2Ij/T1_N3.mgz --like /tmp/tmp.MLt16FY2Ij/T1.mgz --conform
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /tmp/tmp.MLt16FY2Ij/tmp.mri_nu_correct.mni.23/nu2.mnc...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (1, 0, 0)
j_ras = (0, 1, 0)
k_ras = (0, 0, 1)
INFO: transform src into the like-volume: /tmp/tmp.MLt16FY2Ij/T1.mgz
changing data type from float to uchar (noscale = 0)...
MRIchangeType: Building histogram
writing to /tmp/tmp.MLt16FY2Ij/T1_N3.mgz...

Sun Sep 5 13:49:03 UTC 2021
mri_nu_correct.mni done

mri_convert /tmp/tmp.MLt16FY2Ij/T1_N3.mgz /tmp/tmp.hh0vCEw4zT/T1_N3.nii.gz
mri_convert.bin /tmp/tmp.MLt16FY2Ij/T1_N3.mgz /tmp/tmp.hh0vCEw4zT/T1_N3.nii.gz
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /tmp/tmp.MLt16FY2Ij/T1_N3.mgz...
TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (1, 0, 0)
j_ras = (0, 1, 0)
k_ras = (0, 0, 1)
writing to /tmp/tmp.hh0vCEw4zT/T1_N3.nii.gz...

mri_normalize -g 1 -mprage /tmp/tmp.MLt16FY2Ij/T1_N3.mgz /tmp/tmp.MLt16FY2Ij/T1_norm.mgz
using max gradient = 1.000
assuming input volume is MGH (Van der Kouwe) MP-RAGE
reading from /tmp/tmp.MLt16FY2Ij/T1_N3.mgz...
normalizing image...
processing without aseg, no1d=0
MRInormInit():
no Talairach xform detected - using skull bounding box to determine origin
MRInormalize():
MRIsplineNormalize(): npeaks = 20
Starting OpenSpline(): npoints = 20
building Voronoi diagram...
performing soap bubble smoothing, sigma = 8...

Iterating 2 times

3d normalization pass 1 of 2
white matter peak found at 110
white matter peak found at 109
gm peak at 70 (70), valley at 41 (41)
csf peak at 36, setting threshold to 58
building Voronoi diagram...
performing soap bubble smoothing, sigma = 8...

3d normalization pass 2 of 2
white matter peak found at 110
white matter peak found at 110
gm peak at 71 (71), valley at 33 (33)
csf peak at 36, setting threshold to 59
building Voronoi diagram...
performing soap bubble smoothing, sigma = 8...
Done iterating ---------------------------------
writing output to /tmp/tmp.MLt16FY2Ij/T1_norm.mgz
3D bias adjustment took 0 minutes and 58 seconds.

mri_convert /tmp/tmp.MLt16FY2Ij/T1_norm.mgz /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz
mri_convert.bin /tmp/tmp.MLt16FY2Ij/T1_norm.mgz /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /tmp/tmp.MLt16FY2Ij/T1_norm.mgz...
TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (1, 0, 0)
j_ras = (0, 1, 0)
k_ras = (0, 0, 1)
writing to /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz...

Removing job directory...

Skull stripping T1
bet /INPUTS/T1.nii.gz /tmp/tmp.hh0vCEw4zT/T1_mask.nii.gz -R

epi_reg distorted b0 to T1
epi_reg --epi=/INPUTS/b0.nii.gz --t1=/INPUTS/T1.nii.gz --t1brain=/tmp/tmp.hh0vCEw4zT/T1_mask.nii.gz --out=/tmp/tmp.hh0vCEw4zT/epi_reg_d
Running FAST segmentation
FLIRT pre-alignment
Running BBR
0.979595 0.997454 -0.001571 -0.071297 0.000000 -0.003473 0.997502 -0.070558 0.000000 0.071230 0.070626 0.994956 0.000000 -0.919118 -9.448610 17.206195 1.000000

converting FSL transform to ANTS transform
c3d_affine_tool -ref /INPUTS/T1.nii.gz -src /INPUTS/b0.nii.gz /tmp/tmp.hh0vCEw4zT/epi_reg_d.mat -fsl2ras -oitk /tmp/tmp.hh0vCEw4zT/epi_reg_d_ANTS.txt

ANTS syn registration
antsRegistrationSyNQuick.sh -d 3 -f /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz -m /INPUTS/T1.nii.gz -o /tmp/tmp.hh0vCEw4zT/ANTS

---

Mapping parameters

ANTSPATH is /extra/ANTS/bin/ants/bin/

Dimensionality: 3
Output name prefix: /tmp/tmp.hh0vCEw4zT/ANTS
Fixed images: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz
Moving images: /INPUTS/T1.nii.gz
Mask images:
Initial transforms:
Number of threads: 1
Spline distance: 26
Transform type: s
MI histogram bins: 32
Precision: d
Use histogram matching 0

antsRegistration call:

/extra/ANTS/bin/ants/bin//antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [/tmp/tmp.hh0vCEw4zT/ANTS,/tmp/tmp.hh0vCEw4zT/ANTSWarped.nii.gz,/tmp/tmp.hh0vCEw4zT/ANTSInverseWarped.nii.gz] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [0.005,0.995] --initial-moving-transform [/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1] --transform Rigid[0.1] --metric MI[/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1,32,Regular,0.25] --convergence [1000x500x250x0,1e-6,10] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[0.1] --metric MI[/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1,32,Regular,0.25] --convergence [1000x500x250x0,1e-6,10] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[0.1,3,0] --metric MI[/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1,32] --convergence [100x70x50x0,1e-6,10] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox

All_Command_lines_OK
Using double precision for computations.

The composite transform comprises the following transforms (in order):

1. Center of mass alignment using fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz and moving image: /INPUTS/T1.nii.gz (type = Euler3DTransform)
   =============================================================================
   number of levels = 4
   number of levels = 4
   number of levels = 4
   fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz
   moving image: /INPUTS/T1.nii.gz
   fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz
   moving image: /INPUTS/T1.nii.gz
   fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz
   moving image: /INPUTS/T1.nii.gz
   Dimension = 3
   Number of stages = 3
   Use Histogram Matching false
   Winsorize image intensities true
   Lower quantile = 0.005
   Upper quantile = 0.995
   Stage 1 State
   Image metric = Mattes
   Fixed image = Image (0x425d5d0)
   RTTI typeinfo: itk::Image<double, 3u>
   Reference Count: 2
   Modified Time: 1630
   Debug: Off
   Object Name:
   Observers:
   none
   Source: (none)
   Source output name: (none)
   Release Data: Off
   Data Released: False
   Global Release Data: Off
   PipelineMTime: 0
   UpdateMTime: 1431
   RealTimeStamp: 0 seconds
   LargestPossibleRegion:
   Dimension: 3
   Index: [0, 0, 0]
   Size: [193, 229, 193]
   BufferedRegion:
   Dimension: 3
   Index: [0, 0, 0]
   Size: [193, 229, 193]
   RequestedRegion:
   Dimension: 3
   Index: [0, 0, 0]
   Size: [193, 229, 193]
   Spacing: [1, 1, 1]
   Origin: [96, 132, -78]
   Direction:
   -1 0 0
   0 -1 0
   0 0 1

IndexToPointMatrix:
-1 0 0
0 -1 0
0 0 1

PointToIndexMatrix:
-1 0 0
0 -1 0
0 0 1

Inverse Direction:
-1 0 0
0 -1 0
0 0 1

PixelContainer:
ImportImageContainer (0x4250c60)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 1428
Debug: Off
Object Name:
Observers:
none
Pointer: 0x7fedc5af5010
Container manages memory: true
Size: 8530021
Capacity: 8530021

 Moving image = Image (0x4283c90)

RTTI typeinfo: itk::Image<double, 3u>
Reference Count: 2
Modified Time: 1631
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 1628
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [176, 240, 256]
BufferedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [176, 240, 256]
RequestedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [176, 240, 256]
Spacing: [1.2, 1.05469, 1.05469]
Origin: [105.025, 97.9332, -133.507]
Direction:
-1 0 0
0 -1 0
0 0 1

IndexToPointMatrix:
-1.2 0 0
0 -1.05469 0
0 0 1.05469

PointToIndexMatrix:
-0.833333 0 0
0 -0.948148 0
0 0 0.948148

Inverse Direction:
-1 0 0
0 -1 0
0 0 1

PixelContainer:
ImportImageContainer (0x425c530)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 1625
Debug: Off
Object Name:
Observers:
none
Pointer: 0x7fedc0874010
Container manages memory: true
Size: 10813440
Capacity: 10813440

 Weighting = 1
 Sampling strategy = regular
 Number of bins = 32
 Radius = 4
 Sampling percentage  = 0.25

Transform = Rigid
Gradient step = 0.1
Update field sigma (voxel space) = 0
Total field sigma (voxel space) = 0
Update field time sigma = 0
Total field time sigma = 0
Number of time indices = 0
Number of time point samples = 0
Stage 2 State
Image metric = Mattes
Fixed image = Image (0x4261710)
RTTI typeinfo: itk::Image<double, 3u>
Reference Count: 2
Modified Time: 2024
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 1825
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [193, 229, 193]
BufferedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [193, 229, 193]
RequestedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [193, 229, 193]
Spacing: [1, 1, 1]
Origin: [96, 132, -78]
Direction:
-1 0 0
0 -1 0
0 0 1

IndexToPointMatrix:
-1 0 0
0 -1 0
0 0 1

PointToIndexMatrix:
-1 0 0
0 -1 0
0 0 1

Inverse Direction:
-1 0 0
0 -1 0
0 0 1

PixelContainer:
ImportImageContainer (0x425cc70)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 1822
Debug: Off
Object Name:
Observers:
none
Pointer: 0x7fedbc75f010
Container manages memory: true
Size: 8530021
Capacity: 8530021

 Moving image = Image (0x4279ae0)

RTTI typeinfo: itk::Image<double, 3u>
Reference Count: 2
Modified Time: 2025
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 2022
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [176, 240, 256]
BufferedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [176, 240, 256]
RequestedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [176, 240, 256]
Spacing: [1.2, 1.05469, 1.05469]
Origin: [105.025, 97.9332, -133.507]
Direction:
-1 0 0
0 -1 0
0 0 1

IndexToPointMatrix:
-1.2 0 0
0 -1.05469 0
0 0 1.05469

PointToIndexMatrix:
-0.833333 0 0
0 -0.948148 0
0 0 0.948148

Inverse Direction:
-1 0 0
0 -1 0
0 0 1

PixelContainer:
ImportImageContainer (0x4277a60)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 2019
Debug: Off
Object Name:
Observers:
none
Pointer: 0x7fedb74de010
Container manages memory: true
Size: 10813440
Capacity: 10813440

 Weighting = 1
 Sampling strategy = regular
 Number of bins = 32
 Radius = 4
 Sampling percentage  = 0.25

Transform = Affine
Gradient step = 0.1
Update field sigma (voxel space) = 0
Total field sigma (voxel space) = 0
Update field time sigma = 0
Total field time sigma = 0
Number of time indices = 0
Number of time point samples = 0
Stage 3 State
Image metric = Mattes
Fixed image = Image (0x4275810)
RTTI typeinfo: itk::Image<double, 3u>
Reference Count: 2
Modified Time: 2418
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 2219
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [193, 229, 193]
BufferedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [193, 229, 193]
RequestedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [193, 229, 193]
Spacing: [1, 1, 1]
Origin: [96, 132, -78]
Direction:
-1 0 0
0 -1 0
0 0 1

IndexToPointMatrix:
-1 0 0
0 -1 0
0 0 1

PointToIndexMatrix:
-1 0 0
0 -1 0
0 0 1

Inverse Direction:
-1 0 0
0 -1 0
0 0 1

PixelContainer:
ImportImageContainer (0x42781b0)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 2216
Debug: Off
Object Name:
Observers:
none
Pointer: 0x7fedb33c9010
Container manages memory: true
Size: 8530021
Capacity: 8530021

 Moving image = Image (0x427a010)

RTTI typeinfo: itk::Image<double, 3u>
Reference Count: 2
Modified Time: 2419
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 2416
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [176, 240, 256]
BufferedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [176, 240, 256]
RequestedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [176, 240, 256]
Spacing: [1.2, 1.05469, 1.05469]
Origin: [105.025, 97.9332, -133.507]
Direction:
-1 0 0
0 -1 0
0 0 1

IndexToPointMatrix:
-1.2 0 0
0 -1.05469 0
0 0 1.05469

PointToIndexMatrix:
-0.833333 0 0
0 -0.948148 0
0 0 0.948148

Inverse Direction:
-1 0 0
0 -1 0
0 0 1

PixelContainer:
ImportImageContainer (0x427c1e0)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 2413
Debug: Off
Object Name:
Observers:
none
Pointer: 0x7fedae148010
Container manages memory: true
Size: 10813440
Capacity: 10813440

 Weighting = 1
 Sampling strategy = none
 Number of bins = 32
 Radius = 4
 Sampling percentage  = 1

Transform = SyN
Gradient step = 0.1
Update field sigma (voxel space) = 3
Total field sigma (voxel space) = 0
Update field time sigma = 0
Total field time sigma = 0
Number of time indices = 0
Number of time point samples = 0
Registration using 3 total stages.

Stage 0
iterations = 1000x500x250x0
convergence threshold = 1e-06
convergence window size = 10
number of levels = 4
using the Mattes MI metric (number of bins = 32, weight = 1)
preprocessing: winsorizing the image intensities
Shrink factors (level 1 out of 4): [8, 8, 8]
Shrink factors (level 2 out of 4): [4, 4, 4]
Shrink factors (level 3 out of 4): [2, 2, 2]
Shrink factors (level 4 out of 4): [1, 1, 1]
smoothing sigmas per level: [3, 2, 1, 0]
regular sampling (percentage = 0.25)

*** Running Euler3DTransform registration ***

DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -4.410765970967e-01, 1.797693134862e+308, 1.2625e+00, 1.2625e+00,
2DIAGNOSTIC, 2, -4.423822313012e-01, 1.797693134862e+308, 1.2719e+00, 9.4199e-03,
2DIAGNOSTIC, 3, -4.449666839466e-01, 1.797693134862e+308, 1.2816e+00, 9.7101e-03,
2DIAGNOSTIC, 4, -4.499506741078e-01, 1.797693134862e+308, 1.2916e+00, 9.9790e-03,
2DIAGNOSTIC, 5, -4.597544450515e-01, 1.797693134862e+308, 1.3021e+00, 1.0465e-02,
2DIAGNOSTIC, 6, -4.723994958535e-01, 1.797693134862e+308, 1.3119e+00, 9.8310e-03,
2DIAGNOSTIC, 7, -5.091388277743e-01, 1.797693134862e+308, 1.3216e+00, 9.7330e-03,
2DIAGNOSTIC, 8, -5.600894377160e-01, 1.797693134862e+308, 1.3333e+00, 1.1668e-02,
2DIAGNOSTIC, 9, -6.114615918207e-01, 1.797693134862e+308, 1.3470e+00, 1.3692e-02,
2DIAGNOSTIC, 10, -6.118732360369e-01, 2.437639890189e-02, 1.3596e+00, 1.2615e-02,
2DIAGNOSTIC, 11, -6.152986184714e-01, 2.453910164489e-02, 1.3693e+00, 9.7289e-03,
2DIAGNOSTIC, 12, -6.210374732157e-01, 2.280819562927e-02, 1.3818e+00, 1.2460e-02,
2DIAGNOSTIC, 13, -6.238187400031e-01, 1.952964947968e-02, 1.3933e+00, 1.1520e-02,
2DIAGNOSTIC, 14, -6.251314087618e-01, 1.526227456698e-02, 1.4048e+00, 1.1473e-02,
2DIAGNOSTIC, 15, -6.260156852704e-01, 1.067569397690e-02, 1.4195e+00, 1.4765e-02,
2DIAGNOSTIC, 16, -6.262955668545e-01, 6.208466862358e-03, 1.4297e+00, 1.0195e-02,
2DIAGNOSTIC, 17, -6.271796514909e-01, 2.885175772140e-03, 1.4393e+00, 9.5441e-03,
2DIAGNOSTIC, 18, -6.276740024717e-01, 1.134960852402e-03, 1.4502e+00, 1.0887e-02,
2DIAGNOSTIC, 19, -6.279585009969e-01, 8.716403599017e-04, 1.4605e+00, 1.0338e-02,
2DIAGNOSTIC, 20, -6.282505981325e-01, 5.753390034980e-04, 1.4753e+00, 1.4753e-02,
2DIAGNOSTIC, 21, -6.288832125246e-01, 3.514813846319e-04, 1.4920e+00, 1.6792e-02,
2DIAGNOSTIC, 22, -6.289208179932e-01, 2.471179574167e-04, 1.5053e+00, 1.3211e-02,
2DIAGNOSTIC, 23, -6.289260724057e-01, 1.896418691596e-04, 1.5180e+00, 1.2727e-02,
2DIAGNOSTIC, 24, -6.289017332905e-01, 1.463556554922e-04, 1.5278e+00, 9.8171e-03,
2DIAGNOSTIC, 25, -6.289107641811e-01, 1.110052233278e-04, 1.5375e+00, 9.6722e-03,
2DIAGNOSTIC, 26, -6.289253120247e-01, 7.339690511507e-05, 1.5495e+00, 1.2051e-02,
2DIAGNOSTIC, 27, -6.289290465909e-01, 4.798702424923e-05, 1.5616e+00, 1.2101e-02,
2DIAGNOSTIC, 28, -6.289362443045e-01, 2.900235438224e-05, 1.5783e+00, 1.6679e-02,
2DIAGNOSTIC, 29, -6.289372194823e-01, 1.361649651306e-05, 1.5905e+00, 1.2196e-02,
2DIAGNOSTIC, 30, -6.289450770550e-01, 2.736274509363e-06, 1.6022e+00, 1.1672e-02,
2DIAGNOSTIC, 31, -6.289504691447e-01, 2.410004584709e-06, 1.6150e+00, 1.2787e-02,
2DIAGNOSTIC, 32, -6.289555433451e-01, 2.619728241067e-06, 1.6282e+00, 1.3222e-02,
2DIAGNOSTIC, 33, -6.289725636287e-01, 3.008435924594e-06, 1.6413e+00, 1.3152e-02,
2DIAGNOSTIC, 34, -6.290094199620e-01, 3.356495151818e-06, 1.6550e+00, 1.3666e-02,
2DIAGNOSTIC, 35, -6.290740955870e-01, 4.456112066085e-06, 1.6654e+00, 1.0442e-02,
2DIAGNOSTIC, 36, -6.290941032118e-01, 5.603409865561e-06, 1.6774e+00, 1.1938e-02,
2DIAGNOSTIC, 37, -6.291089373412e-01, 6.489611208214e-06, 1.6947e+00, 1.7294e-02,
2DIAGNOSTIC, 38, -6.291091454909e-01, 6.896591896816e-06, 1.7063e+00, 1.1625e-02,
2DIAGNOSTIC, 39, -6.291116132739e-01, 6.745514219492e-06, 1.7162e+00, 9.8870e-03,
2DIAGNOSTIC, 40, -6.291133726902e-01, 6.145552684446e-06, 1.7263e+00, 1.0066e-02,
2DIAGNOSTIC, 41, -6.291139699721e-01, 5.140484017622e-06, 1.7377e+00, 1.1443e-02,
2DIAGNOSTIC, 42, -6.291151752390e-01, 3.853021771125e-06, 1.7471e+00, 9.4440e-03,
2DIAGNOSTIC, 43, -6.291175555854e-01, 2.551180947302e-06, 1.7568e+00, 9.6250e-03,
2DIAGNOSTIC, 44, -6.291274666281e-01, 1.630885231599e-06, 1.7693e+00, 1.2550e-02,
2DIAGNOSTIC, 45, -6.291332273601e-01, 1.405296763159e-06, 1.7857e+00, 1.6419e-02,
2DIAGNOSTIC, 46, -6.291359610077e-01, 1.356470152390e-06, 1.7986e+00, 1.2822e-02,
2DIAGNOSTIC, 47, -6.291400399371e-01, 1.441542601295e-06, 1.8094e+00, 1.0835e-02,
2DIAGNOSTIC, 48, -6.291478026942e-01, 1.530175043708e-06, 1.8192e+00, 9.8200e-03,
2DIAGNOSTIC, 49, -6.292033412918e-01, 2.090488864702e-06, 1.8305e+00, 1.1243e-02,
2DIAGNOSTIC, 50, -6.292427810428e-01, 2.866370079770e-06, 1.8409e+00, 1.0477e-02,
2DIAGNOSTIC, 51, -6.293786660099e-01, 4.658412185932e-06, 1.8544e+00, 1.3472e-02,
2DIAGNOSTIC, 52, -6.298575708116e-01, 1.031988789379e-05, 1.8715e+00, 1.7128e-02,
2DIAGNOSTIC, 53, -6.299198478421e-01, 1.529815704952e-05, 1.8812e+00, 9.6521e-03,
2DIAGNOSTIC, 54, -6.300788499055e-01, 2.019106678284e-05, 1.8925e+00, 1.1281e-02,
2DIAGNOSTIC, 55, -6.301142073141e-01, 2.339440033855e-05, 1.9019e+00, 9.4719e-03,
2DIAGNOSTIC, 56, -6.301479856543e-01, 2.458463506988e-05, 1.9139e+00, 1.1943e-02,
2DIAGNOSTIC, 57, -6.302578808155e-01, 2.431850095239e-05, 1.9266e+00, 1.2761e-02,
2DIAGNOSTIC, 58, -6.302547487738e-01, 2.178255771499e-05, 1.9408e+00, 1.4126e-02,
2DIAGNOSTIC, 59, -6.302564268012e-01, 1.780931282842e-05, 1.9533e+00, 1.2559e-02,
2DIAGNOSTIC, 60, -6.302566407378e-01, 1.265051808145e-05, 1.9689e+00, 1.5543e-02,
2DIAGNOSTIC, 61, -6.302566427936e-01, 7.457511325516e-06, 1.9845e+00, 1.5658e-02,
2DIAGNOSTIC, 62, -6.302566429038e-01, 5.375581895690e-06, 1.9996e+00, 1.5060e-02,
2DIAGNOSTIC, 63, -6.302566429084e-01, 3.328856213767e-06, 2.0189e+00, 1.9345e-02,
2DIAGNOSTIC, 64, -6.302566429085e-01, 2.247286236125e-06, 2.0319e+00, 1.2927e-02,
2DIAGNOSTIC, 65, -6.302566429085e-01, 1.289444910721e-06, 2.0474e+00, 1.5509e-02,
DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -5.375735157177e-01, 1.797693134862e+308, 3.3821e+00, 1.3347e+00,
2DIAGNOSTIC, 2, -5.379543106374e-01, 1.797693134862e+308, 3.4539e+00, 7.1822e-02,
2DIAGNOSTIC, 3, -5.383595095561e-01, 1.797693134862e+308, 3.5257e+00, 7.1758e-02,
2DIAGNOSTIC, 4, -5.386022189964e-01, 1.797693134862e+308, 3.5965e+00, 7.0866e-02,
2DIAGNOSTIC, 5, -5.387260111326e-01, 1.797693134862e+308, 3.6675e+00, 7.0978e-02,
2DIAGNOSTIC, 6, -5.389739999080e-01, 1.797693134862e+308, 3.7377e+00, 7.0153e-02,
2DIAGNOSTIC, 7, -5.393971637608e-01, 1.797693134862e+308, 3.8061e+00, 6.8405e-02,
2DIAGNOSTIC, 8, -5.418411004627e-01, 1.797693134862e+308, 3.8945e+00, 8.8403e-02,
2DIAGNOSTIC, 9, -5.423700001849e-01, 1.797693134862e+308, 3.9726e+00, 7.8132e-02,
2DIAGNOSTIC, 10, -5.425480191320e-01, 6.187978949828e-04, 4.0574e+00, 8.4758e-02,
2DIAGNOSTIC, 11, -5.433346058127e-01, 6.349298994615e-04, 4.1531e+00, 9.5735e-02,
2DIAGNOSTIC, 12, -5.435664262932e-01, 6.169873237681e-04, 4.2358e+00, 8.2699e-02,
2DIAGNOSTIC, 13, -5.436188194727e-01, 5.632455380554e-04, 4.3036e+00, 6.7844e-02,
2DIAGNOSTIC, 14, -5.437255985528e-01, 4.794838287238e-04, 4.3901e+00, 8.6429e-02,
2DIAGNOSTIC, 15, -5.439009225737e-01, 3.749610215984e-04, 4.4556e+00, 6.5555e-02,
2DIAGNOSTIC, 16, -5.439704595948e-01, 2.600847463210e-04, 4.5311e+00, 7.5479e-02,
2DIAGNOSTIC, 17, -5.440639050477e-01, 1.489516400090e-04, 4.5985e+00, 6.7359e-02,
2DIAGNOSTIC, 18, -5.441139109848e-01, 1.093268758798e-04, 4.6665e+00, 6.8033e-02,
2DIAGNOSTIC, 19, -5.441569274778e-01, 7.989810951928e-05, 4.7317e+00, 6.5261e-02,
2DIAGNOSTIC, 20, -5.443149500235e-01, 5.440499952248e-05, 4.8058e+00, 7.4026e-02,
2DIAGNOSTIC, 21, -5.451073403747e-01, 6.562236613097e-05, 4.8990e+00, 9.3195e-02,
2DIAGNOSTIC, 22, -5.459058541905e-01, 9.391599929915e-05, 4.9755e+00, 7.6535e-02,
2DIAGNOSTIC, 23, -5.460012657357e-01, 1.141807743993e-04, 5.0558e+00, 8.0282e-02,
2DIAGNOSTIC, 24, -5.460928416604e-01, 1.268465781107e-04, 5.1231e+00, 6.7326e-02,
2DIAGNOSTIC, 25, -5.467188400475e-01, 1.436115420353e-04, 5.1974e+00, 7.4274e-02,
2DIAGNOSTIC, 26, -5.474772938542e-01, 1.616848484832e-04, 5.2745e+00, 7.7137e-02,
2DIAGNOSTIC, 27, -5.478318323640e-01, 1.714413205014e-04, 5.3656e+00, 9.1111e-02,
2DIAGNOSTIC, 28, -5.482311411385e-01, 1.731667132696e-04, 5.4407e+00, 7.5087e-02,
2DIAGNOSTIC, 29, -5.482650158897e-01, 1.602604333125e-04, 5.5060e+00, 6.5318e-02,
2DIAGNOSTIC, 30, -5.483017164784e-01, 1.362984141214e-04, 5.5745e+00, 6.8462e-02,
2DIAGNOSTIC, 31, -5.483274436389e-01, 1.143741517831e-04, 5.6437e+00, 6.9152e-02,
2DIAGNOSTIC, 32, -5.485508243643e-01, 9.975858544491e-05, 5.7274e+00, 8.3783e-02,
2DIAGNOSTIC, 33, -5.487389561744e-01, 8.121730399931e-05, 5.8343e+00, 1.0690e-01,
2DIAGNOSTIC, 34, -5.487576665720e-01, 5.773855729670e-05, 5.9145e+00, 8.0172e-02,
2DIAGNOSTIC, 35, -5.487921905835e-01, 3.997649264098e-05, 6.0046e+00, 9.0084e-02,
2DIAGNOSTIC, 36, -5.487935315078e-01, 3.045796470585e-05, 6.0828e+00, 7.8253e-02,
2DIAGNOSTIC, 37, -5.487942205690e-01, 2.345388292104e-05, 6.1584e+00, 7.5539e-02,
2DIAGNOSTIC, 38, -5.487940262148e-01, 2.010184638402e-05, 6.2239e+00, 6.5464e-02,
2DIAGNOSTIC, 39, -5.487914956363e-01, 1.553112482353e-05, 6.2888e+00, 6.4940e-02,
2DIAGNOSTIC, 40, -5.487990473378e-01, 1.042317953349e-05, 6.3633e+00, 7.4477e-02,
2DIAGNOSTIC, 41, -5.488061075390e-01, 5.011305655386e-06, 6.4384e+00, 7.5115e-02,
2DIAGNOSTIC, 42, -5.488052951067e-01, 2.159336529695e-06, 6.5126e+00, 7.4212e-02,
2DIAGNOSTIC, 43, -5.488086290920e-01, 1.630905349260e-06, 6.5772e+00, 6.4629e-02,
2DIAGNOSTIC, 44, -5.488111111717e-01, 1.281945899427e-06, 6.6513e+00, 7.4119e-02,
2DIAGNOSTIC, 45, -5.488199299305e-01, 1.395081640026e-06, 6.7343e+00, 8.2997e-02,
2DIAGNOSTIC, 46, -5.488193325582e-01, 1.442033506049e-06, 6.8001e+00, 6.5801e-02,
2DIAGNOSTIC, 47, -5.488192603297e-01, 1.425020433796e-06, 6.8755e+00, 7.5390e-02,
2DIAGNOSTIC, 48, -5.488195476491e-01, 1.342335184652e-06, 6.9399e+00, 6.4415e-02,
2DIAGNOSTIC, 49, -5.488220599060e-01, 1.195455112856e-06, 7.0144e+00, 7.4460e-02,
2DIAGNOSTIC, 50, -5.488259905203e-01, 1.118129649261e-06, 7.0793e+00, 6.4925e-02,
2DIAGNOSTIC, 51, -5.488283633583e-01, 1.094376498208e-06, 7.1531e+00, 7.3784e-02,
2DIAGNOSTIC, 52, -5.488340709304e-01, 1.076775595348e-06, 7.2201e+00, 6.6990e-02,
2DIAGNOSTIC, 53, -5.488384686728e-01, 1.090931951046e-06, 7.2998e+00, 7.9732e-02,
2DIAGNOSTIC, 54, -5.488399104570e-01, 1.092349772358e-06, 7.3715e+00, 7.1639e-02,
2DIAGNOSTIC, 55, -5.488482797362e-01, 1.208783132048e-06, 7.4499e+00, 7.8393e-02,
2DIAGNOSTIC, 56, -5.488523469740e-01, 1.291357776691e-06, 7.5239e+00, 7.4069e-02,
2DIAGNOSTIC, 57, -5.488535935679e-01, 1.312276780373e-06, 7.6036e+00, 7.9621e-02,
2DIAGNOSTIC, 58, -5.488606787010e-01, 1.326974724894e-06, 7.6802e+00, 7.6607e-02,
2DIAGNOSTIC, 59, -5.488832841402e-01, 1.486510645840e-06, 7.7497e+00, 6.9578e-02,
2DIAGNOSTIC, 60, -5.488870635520e-01, 1.611254024293e-06, 7.8356e+00, 8.5888e-02,
2DIAGNOSTIC, 61, -5.489013714658e-01, 1.771171544162e-06, 7.9120e+00, 7.6371e-02,
2DIAGNOSTIC, 62, -5.488866368537e-01, 1.729889959490e-06, 7.9855e+00, 7.3502e-02,
2DIAGNOSTIC, 63, -5.489454879777e-01, 2.100058755710e-06, 8.0712e+00, 8.5667e-02,
2DIAGNOSTIC, 64, -5.489481633908e-01, 2.320680183129e-06, 8.1660e+00, 9.4843e-02,
2DIAGNOSTIC, 65, -5.489531260946e-01, 2.467406186091e-06, 8.2449e+00, 7.8916e-02,
2DIAGNOSTIC, 66, -5.489574830167e-01, 2.494158235038e-06, 8.3112e+00, 6.6258e-02,
2DIAGNOSTIC, 67, -5.489599314043e-01, 2.355777910041e-06, 8.3809e+00, 6.9673e-02,
2DIAGNOSTIC, 68, -5.489670699219e-01, 2.139622479563e-06, 8.4603e+00, 7.9436e-02,
2DIAGNOSTIC, 69, -5.489621075837e-01, 1.897533303189e-06, 8.5478e+00, 8.7461e-02,
2DIAGNOSTIC, 70, -5.489635288269e-01, 1.566660662882e-06, 8.6123e+00, 6.4536e-02,
2DIAGNOSTIC, 71, -5.489887310858e-01, 1.435423837284e-06, 8.6860e+00, 7.3725e-02,
2DIAGNOSTIC, 72, -5.489996716094e-01, 1.167752412743e-06, 8.9177e+00, 2.3165e-01,
2DIAGNOSTIC, 73, -5.489996715959e-01, 1.256438431081e-06, 8.9822e+00, 6.4525e-02,
2DIAGNOSTIC, 74, -5.489996722396e-01, 1.286334953408e-06, 9.0468e+00, 6.4619e-02,
2DIAGNOSTIC, 75, -5.489996733279e-01, 1.268044939566e-06, 9.1120e+00, 6.5165e-02,
2DIAGNOSTIC, 76, -5.489996751677e-01, 1.195095087766e-06, 9.1768e+00, 6.4856e-02,
2DIAGNOSTIC, 77, -5.489996782767e-01, 1.062281525513e-06, 9.2441e+00, 6.7270e-02,
DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -4.881886668021e-01, 1.797693134862e+308, 1.1051e+01, 1.8071e+00,
2DIAGNOSTIC, 2, -4.884363975150e-01, 1.797693134862e+308, 1.1508e+01, 4.5700e-01,
2DIAGNOSTIC, 3, -4.887603663610e-01, 1.797693134862e+308, 1.1969e+01, 4.6045e-01,
2DIAGNOSTIC, 4, -4.891038893838e-01, 1.797693134862e+308, 1.2389e+01, 4.2020e-01,
2DIAGNOSTIC, 5, -4.893076470659e-01, 1.797693134862e+308, 1.2816e+01, 4.2690e-01,
2DIAGNOSTIC, 6, -4.894981771070e-01, 1.797693134862e+308, 1.3260e+01, 4.4421e-01,
2DIAGNOSTIC, 7, -4.895480230677e-01, 1.797693134862e+308, 1.4012e+01, 7.5205e-01,
2DIAGNOSTIC, 8, -4.895510473075e-01, 1.797693134862e+308, 1.4760e+01, 7.4777e-01,
2DIAGNOSTIC, 9, -4.895508192635e-01, 1.797693134862e+308, 1.5261e+01, 5.0100e-01,
2DIAGNOSTIC, 10, -4.895500371489e-01, 1.849806681142e-04, 1.5819e+01, 5.5863e-01,
2DIAGNOSTIC, 11, -4.895504515085e-01, 1.211797573867e-04, 1.6379e+01, 5.5973e-01,
2DIAGNOSTIC, 12, -4.895500299620e-01, 6.922161396876e-05, 1.6883e+01, 5.0351e-01,
2DIAGNOSTIC, 13, -4.895495683510e-01, 3.350607468146e-05, 1.7321e+01, 4.3798e-01,
2DIAGNOSTIC, 14, -4.895491938608e-01, 1.420002916604e-05, 1.7894e+01, 5.7330e-01,
2DIAGNOSTIC, 15, -4.895482907303e-01, 4.050229066660e-06, 1.8393e+01, 4.9861e-01,
2DIAGNOSTIC, 16, -4.895473459247e-01, 1.825228455529e-06, 1.8891e+01, 4.9822e-01,
2DIAGNOSTIC, 17, -4.895474786827e-01, 1.581914902404e-06, 1.9328e+01, 4.3720e-01,
2DIAGNOSTIC, 18, -4.895465707808e-01, 1.460251058134e-06, 1.9829e+01, 5.0137e-01,
2DIAGNOSTIC, 19, -4.895462535201e-01, 1.364599561390e-06, 2.0327e+01, 4.9759e-01,
2DIAGNOSTIC, 20, -4.895466209930e-01, 1.295195149027e-06, 2.0810e+01, 4.8348e-01,
2DIAGNOSTIC, 21, -4.895460842768e-01, 1.256315515841e-06, 2.1278e+01, 4.6805e-01,
2DIAGNOSTIC, 22, -4.895459087450e-01, 1.229746238146e-06, 2.1793e+01, 5.1469e-01,
2DIAGNOSTIC, 23, -4.895464633634e-01, 1.228235655792e-06, 2.2294e+01, 5.0136e-01,
2DIAGNOSTIC, 24, -4.895464250350e-01, 1.231353658010e-06, 2.2738e+01, 4.4352e-01,
2DIAGNOSTIC, 25, -4.895467485402e-01, 1.229998934690e-06, 2.3237e+01, 4.9896e-01,
2DIAGNOSTIC, 26, -4.895479426840e-01, 1.238068596275e-06, 2.3732e+01, 4.9517e-01,
2DIAGNOSTIC, 27, -4.895480880791e-01, 1.250187382174e-06, 2.4421e+01, 6.8900e-01,
2DIAGNOSTIC, 28, -4.895482774781e-01, 1.240019761067e-06, 2.4933e+01, 5.1235e-01,
2DIAGNOSTIC, 29, -4.895478324214e-01, 1.205367784168e-06, 2.5394e+01, 4.6026e-01,
2DIAGNOSTIC, 30, -4.895462822475e-01, 1.140485361019e-06, 2.5783e+01, 3.8899e-01,
2DIAGNOSTIC, 31, -4.895459743568e-01, 1.056993797141e-06, 2.6237e+01, 4.5454e-01,
DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -4.537528647448e-01, 1.797693134862e+308, 2.9955e+01, 3.7181e+00,
Elapsed time (stage 0): 3.0751e+01

Stage 1
iterations = 1000x500x250x0
convergence threshold = 1.0000e-06
convergence window size = 10
number of levels = 4
using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00)
preprocessing: winsorizing the image intensities
Shrink factors (level 1 out of 4): [8, 8, 8]
Shrink factors (level 2 out of 4): [4, 4, 4]
Shrink factors (level 3 out of 4): [2, 2, 2]
Shrink factors (level 4 out of 4): [1, 1, 1]
smoothing sigmas per level: [3, 2, 1, 0]
regular sampling (percentage = 2.5000e-01)

*** Running AffineTransform registration ***

DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -6.193126967070e-01, 1.797693134862e+308, 1.2758e+00, 1.2758e+00,
2DIAGNOSTIC, 2, -6.208251559265e-01, 1.797693134862e+308, 1.2850e+00, 9.2468e-03,
2DIAGNOSTIC, 3, -6.235808177764e-01, 1.797693134862e+308, 1.2949e+00, 9.8770e-03,
2DIAGNOSTIC, 4, -6.285136547121e-01, 1.797693134862e+308, 1.3047e+00, 9.7871e-03,
2DIAGNOSTIC, 5, -6.355983502794e-01, 1.797693134862e+308, 1.3158e+00, 1.1081e-02,
2DIAGNOSTIC, 6, -6.465725121461e-01, 1.797693134862e+308, 1.3280e+00, 1.2165e-02,
2DIAGNOSTIC, 7, -6.640971114875e-01, 1.797693134862e+308, 1.3432e+00, 1.5286e-02,
2DIAGNOSTIC, 8, -6.992803930490e-01, 1.797693134862e+308, 1.3616e+00, 1.8356e-02,
2DIAGNOSTIC, 9, -7.004628080453e-01, 1.797693134862e+308, 1.3727e+00, 1.1115e-02,
2DIAGNOSTIC, 10, -7.024049627269e-01, 9.747162191178e-03, 1.3830e+00, 1.0238e-02,
2DIAGNOSTIC, 11, -7.048401131760e-01, 9.260854696031e-03, 1.3931e+00, 1.0107e-02,
2DIAGNOSTIC, 12, -7.086363714883e-01, 8.207046309228e-03, 1.4044e+00, 1.1330e-02,
2DIAGNOSTIC, 13, -7.157186315616e-01, 6.886618658119e-03, 1.4144e+00, 1.0017e-02,
2DIAGNOSTIC, 14, -7.195115826694e-01, 5.405736307285e-03, 1.4241e+00, 9.6691e-03,
2DIAGNOSTIC, 15, -7.231820577958e-01, 3.958703678672e-03, 1.4358e+00, 1.1698e-02,
2DIAGNOSTIC, 16, -7.277313093686e-01, 2.747935497616e-03, 1.4494e+00, 1.3595e-02,
2DIAGNOSTIC, 17, -7.314680266874e-01, 1.932843910938e-03, 1.4607e+00, 1.1345e-02,
2DIAGNOSTIC, 18, -7.398563586368e-01, 2.039598754800e-03, 1.4717e+00, 1.0975e-02,
2DIAGNOSTIC, 19, -7.564364938543e-01, 2.325932259755e-03, 1.4813e+00, 9.6440e-03,
2DIAGNOSTIC, 20, -7.727527036655e-01, 2.731705379863e-03, 1.4964e+00, 1.5111e-02,
2DIAGNOSTIC, 21, -7.802756276189e-01, 3.029936046885e-03, 1.5067e+00, 1.0232e-02,
2DIAGNOSTIC, 22, -7.848049505074e-01, 3.170227639062e-03, 1.5176e+00, 1.0967e-02,
2DIAGNOSTIC, 23, -7.884385309088e-01, 3.189717789074e-03, 1.5310e+00, 1.3314e-02,
2DIAGNOSTIC, 24, -8.000590712378e-01, 3.160967326248e-03, 1.5450e+00, 1.3999e-02,
2DIAGNOSTIC, 25, -8.051697095642e-01, 2.970593790306e-03, 1.5597e+00, 1.4752e-02,
2DIAGNOSTIC, 26, -8.094522682213e-01, 2.654853894532e-03, 1.5728e+00, 1.3059e-02,
2DIAGNOSTIC, 27, -8.169711103510e-01, 2.284002395736e-03, 1.5829e+00, 1.0117e-02,
2DIAGNOSTIC, 28, -8.314033097814e-01, 2.042719848365e-03, 1.5971e+00, 1.4240e-02,
2DIAGNOSTIC, 29, -8.343135770923e-01, 1.880485421633e-03, 1.6068e+00, 9.7139e-03,
2DIAGNOSTIC, 30, -8.363855777397e-01, 1.791505719185e-03, 1.6223e+00, 1.5474e-02,
2DIAGNOSTIC, 31, -8.388305215601e-01, 1.667077682639e-03, 1.6323e+00, 1.0008e-02,
2DIAGNOSTIC, 32, -8.433887689463e-01, 1.502543267322e-03, 1.6418e+00, 9.4538e-03,
2DIAGNOSTIC, 33, -8.531165357282e-01, 1.355898663269e-03, 1.6546e+00, 1.2810e-02,
2DIAGNOSTIC, 34, -8.563847153845e-01, 1.255068328835e-03, 1.6644e+00, 9.8619e-03,
2DIAGNOSTIC, 35, -8.620960284419e-01, 1.162104975106e-03, 1.6774e+00, 1.2940e-02,
2DIAGNOSTIC, 36, -8.703437982532e-01, 1.096194000202e-03, 1.6902e+00, 1.2826e-02,
2DIAGNOSTIC, 37, -8.733565303612e-01, 1.031769592327e-03, 1.7074e+00, 1.7230e-02,
2DIAGNOSTIC, 38, -8.735254822618e-01, 1.016529336246e-03, 1.7191e+00, 1.1710e-02,
2DIAGNOSTIC, 39, -8.742080980700e-01, 9.410939957850e-04, 1.7293e+00, 1.0186e-02,
2DIAGNOSTIC, 40, -8.748961207220e-01, 8.066365052673e-04, 1.7389e+00, 9.5608e-03,
2DIAGNOSTIC, 41, -8.754343343751e-01, 6.287458945398e-04, 1.7503e+00, 1.1400e-02,
2DIAGNOSTIC, 42, -8.759744489143e-01, 4.436245251174e-04, 1.7600e+00, 9.7249e-03,
2DIAGNOSTIC, 43, -8.771366701338e-01, 3.202103231666e-04, 1.7701e+00, 1.0119e-02,
2DIAGNOSTIC, 44, -8.803967515470e-01, 2.267806660699e-04, 1.7849e+00, 1.4764e-02,
2DIAGNOSTIC, 45, -8.820020530698e-01, 1.737140366165e-04, 1.8077e+00, 2.2807e-02,
2DIAGNOSTIC, 46, -8.820127137923e-01, 1.716950311403e-04, 1.8180e+00, 1.0336e-02,
2DIAGNOSTIC, 47, -8.820514751433e-01, 1.776377400247e-04, 1.8280e+00, 9.9468e-03,
2DIAGNOSTIC, 48, -8.821145962462e-01, 1.680762337024e-04, 1.8387e+00, 1.0735e-02,
2DIAGNOSTIC, 49, -8.822109297947e-01, 1.481913818775e-04, 1.8491e+00, 1.0395e-02,
2DIAGNOSTIC, 50, -8.823512050060e-01, 1.208578251969e-04, 1.8613e+00, 1.2139e-02,
2DIAGNOSTIC, 51, -8.825435393717e-01, 8.869663703981e-05, 1.8745e+00, 1.3203e-02,
2DIAGNOSTIC, 52, -8.827918711350e-01, 5.514345252553e-05, 1.8868e+00, 1.2331e-02,
2DIAGNOSTIC, 53, -8.830820369919e-01, 2.708597621099e-05, 1.8990e+00, 1.2205e-02,
2DIAGNOSTIC, 54, -8.834282611206e-01, 2.122466400214e-05, 1.9118e+00, 1.2810e-02,
2DIAGNOSTIC, 55, -8.837658107767e-01, 2.621513309173e-05, 1.9239e+00, 1.2039e-02,
2DIAGNOSTIC, 56, -8.842076035051e-01, 3.140875140071e-05, 1.9404e+00, 1.6597e-02,
2DIAGNOSTIC, 57, -8.843745980833e-01, 3.468705523938e-05, 1.9571e+00, 1.6657e-02,
2DIAGNOSTIC, 58, -8.845536548972e-01, 3.606004572835e-05, 1.9702e+00, 1.3055e-02,
2DIAGNOSTIC, 59, -8.847006661866e-01, 3.542992875627e-05, 1.9841e+00, 1.3923e-02,
2DIAGNOSTIC, 60, -8.849087857275e-01, 3.349866354086e-05, 1.9999e+00, 1.5862e-02,
2DIAGNOSTIC, 61, -8.850380202869e-01, 3.028809152525e-05, 2.0123e+00, 1.2375e-02,
2DIAGNOSTIC, 62, -8.851513552802e-01, 2.637893309923e-05, 2.0232e+00, 1.0915e-02,
2DIAGNOSTIC, 63, -8.857122825761e-01, 2.487540578331e-05, 2.0345e+00, 1.1256e-02,
2DIAGNOSTIC, 64, -8.868697684351e-01, 2.924608999944e-05, 2.0476e+00, 1.3060e-02,
2DIAGNOSTIC, 65, -8.876057281628e-01, 3.630843380708e-05, 2.0742e+00, 2.6654e-02,
2DIAGNOSTIC, 66, -8.876130626018e-01, 4.207264350153e-05, 2.0865e+00, 1.2252e-02,
2DIAGNOSTIC, 67, -8.876619702716e-01, 4.489972356396e-05, 2.0993e+00, 1.2849e-02,
2DIAGNOSTIC, 68, -8.877243975632e-01, 4.458979782795e-05, 2.1113e+00, 1.2017e-02,
2DIAGNOSTIC, 69, -8.877773742956e-01, 4.091619205510e-05, 2.1245e+00, 1.3173e-02,
2DIAGNOSTIC, 70, -8.878147698622e-01, 3.463872388704e-05, 2.1371e+00, 1.2584e-02,
2DIAGNOSTIC, 71, -8.878417394991e-01, 2.612876677583e-05, 2.1495e+00, 1.2403e-02,
2DIAGNOSTIC, 72, -8.878763031076e-01, 1.616490543671e-05, 2.1622e+00, 1.2686e-02,
2DIAGNOSTIC, 73, -8.879487899653e-01, 7.878011442742e-06, 2.1741e+00, 1.1927e-02,
2DIAGNOSTIC, 74, -8.880029655045e-01, 4.695510840574e-06, 2.1937e+00, 1.9653e-02,
2DIAGNOSTIC, 75, -8.880233151511e-01, 4.694129147777e-06, 2.2057e+00, 1.1992e-02,
2DIAGNOSTIC, 76, -8.880485646495e-01, 4.436265198549e-06, 2.2175e+00, 1.1752e-02,
2DIAGNOSTIC, 77, -8.881121798270e-01, 4.301969429049e-06, 2.2301e+00, 1.2610e-02,
2DIAGNOSTIC, 78, -8.881279497749e-01, 4.130944376650e-06, 2.2401e+00, 1.0035e-02,
2DIAGNOSTIC, 79, -8.881525110872e-01, 3.944141961533e-06, 2.2513e+00, 1.1114e-02,
2DIAGNOSTIC, 80, -8.882109504026e-01, 3.839794946047e-06, 2.2651e+00, 1.3874e-02,
2DIAGNOSTIC, 81, -8.882259949446e-01, 3.583008034923e-06, 2.2760e+00, 1.0922e-02,
2DIAGNOSTIC, 82, -8.882378452499e-01, 3.215789004571e-06, 2.2864e+00, 1.0335e-02,
2DIAGNOSTIC, 83, -8.882511764988e-01, 2.940517106836e-06, 2.2976e+00, 1.1256e-02,
2DIAGNOSTIC, 84, -8.883769773226e-01, 3.164455810436e-06, 2.3158e+00, 1.8129e-02,
2DIAGNOSTIC, 85, -8.884691897804e-01, 3.554456591580e-06, 2.3258e+00, 9.9921e-03,
2DIAGNOSTIC, 86, -8.884783717479e-01, 3.756888116031e-06, 2.3399e+00, 1.4137e-02,
2DIAGNOSTIC, 87, -8.884803706928e-01, 3.901479241052e-06, 2.3499e+00, 9.9730e-03,
2DIAGNOSTIC, 88, -8.884930939116e-01, 3.818397138179e-06, 2.3593e+00, 9.4280e-03,
2DIAGNOSTIC, 89, -8.884985588748e-01, 3.505702345407e-06, 2.3716e+00, 1.2339e-02,
2DIAGNOSTIC, 90, -8.885234501548e-01, 3.207076857643e-06, 2.3840e+00, 1.2346e-02,
2DIAGNOSTIC, 91, -8.885388983173e-01, 2.759893481216e-06, 2.3935e+00, 9.4831e-03,
2DIAGNOSTIC, 92, -8.885449902200e-01, 2.168083337804e-06, 2.4052e+00, 1.1705e-02,
2DIAGNOSTIC, 93, -8.885533403809e-01, 1.487442734680e-06, 2.4155e+00, 1.0377e-02,
2DIAGNOSTIC, 94, -8.885887578970e-01, 1.288672215849e-06, 2.4340e+00, 1.8463e-02,
2DIAGNOSTIC, 95, -8.885956679424e-01, 1.355196267252e-06, 2.4445e+00, 1.0445e-02,
2DIAGNOSTIC, 96, -8.885990020355e-01, 1.368643808793e-06, 2.4546e+00, 1.0192e-02,
2DIAGNOSTIC, 97, -8.886014462317e-01, 1.300770769375e-06, 2.4668e+00, 1.2148e-02,
2DIAGNOSTIC, 98, -8.886051727590e-01, 1.199951968144e-06, 2.4768e+00, 9.9940e-03,
2DIAGNOSTIC, 99, -8.886151611476e-01, 1.067802336368e-06, 2.4866e+00, 9.8300e-03,
DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -7.753026270574e-01, 1.797693134862e+308, 3.8156e+00, 1.3290e+00,
2DIAGNOSTIC, 2, -7.764075997968e-01, 1.797693134862e+308, 3.8893e+00, 7.3715e-02,
2DIAGNOSTIC, 3, -7.776949809188e-01, 1.797693134862e+308, 3.9629e+00, 7.3550e-02,
2DIAGNOSTIC, 4, -7.790685652039e-01, 1.797693134862e+308, 4.0357e+00, 7.2831e-02,
2DIAGNOSTIC, 5, -7.804940917597e-01, 1.797693134862e+308, 4.1073e+00, 7.1591e-02,
2DIAGNOSTIC, 6, -7.820545545103e-01, 1.797693134862e+308, 4.1764e+00, 6.9151e-02,
2DIAGNOSTIC, 7, -7.829836218790e-01, 1.797693134862e+308, 4.2545e+00, 7.8060e-02,
2DIAGNOSTIC, 8, -7.832335181040e-01, 1.797693134862e+308, 4.3333e+00, 7.8859e-02,
2DIAGNOSTIC, 9, -7.833131158387e-01, 1.797693134862e+308, 4.4659e+00, 1.3257e-01,
2DIAGNOSTIC, 10, -7.833149766506e-01, 7.322685750919e-04, 4.5391e+00, 7.3189e-02,
2DIAGNOSTIC, 11, -7.833413504065e-01, 5.409179901524e-04, 4.6130e+00, 7.3856e-02,
2DIAGNOSTIC, 12, -7.833713296702e-01, 3.671780760417e-04, 4.6865e+00, 7.3570e-02,
2DIAGNOSTIC, 13, -7.834015439084e-01, 2.240727730947e-04, 4.7602e+00, 7.3659e-02,
2DIAGNOSTIC, 14, -7.834318983718e-01, 1.175828770190e-04, 4.8338e+00, 7.3566e-02,
2DIAGNOSTIC, 15, -7.834963772326e-01, 5.020827594822e-05, 4.9082e+00, 7.4434e-02,
2DIAGNOSTIC, 16, -7.835718523151e-01, 2.350812721684e-05, 4.9816e+00, 7.3362e-02,
2DIAGNOSTIC, 17, -7.838730160345e-01, 2.412192028349e-05, 5.0651e+00, 8.3500e-02,
2DIAGNOSTIC, 18, -7.843383531173e-01, 3.686997573428e-05, 5.1690e+00, 1.0393e-01,
2DIAGNOSTIC, 19, -7.844585379231e-01, 4.867761009224e-05, 5.2424e+00, 7.3451e-02,
2DIAGNOSTIC, 20, -7.845020101285e-01, 5.586113908262e-05, 5.3260e+00, 8.3521e-02,
2DIAGNOSTIC, 21, -7.845373669651e-01, 5.846080506153e-05, 5.3991e+00, 7.3099e-02,
2DIAGNOSTIC, 22, -7.845693476412e-01, 5.644653374457e-05, 5.5337e+00, 1.3463e-01,
2DIAGNOSTIC, 23, -7.845719291399e-01, 4.985336122495e-05, 5.6078e+00, 7.4078e-02,
2DIAGNOSTIC, 24, -7.845750615476e-01, 3.978906658979e-05, 5.6930e+00, 8.5270e-02,
2DIAGNOSTIC, 25, -7.845780919486e-01, 2.802067550973e-05, 5.7762e+00, 8.3144e-02,
2DIAGNOSTIC, 26, -7.845799779981e-01, 1.569776386785e-05, 5.8492e+00, 7.3038e-02,
2DIAGNOSTIC, 27, -7.845813228591e-01, 6.835890260494e-06, 5.9219e+00, 7.2662e-02,
2DIAGNOSTIC, 28, -7.845842528101e-01, 4.114799697148e-06, 5.9957e+00, 7.3775e-02,
2DIAGNOSTIC, 29, -7.845909241035e-01, 2.883679288850e-06, 6.0703e+00, 7.4643e-02,
2DIAGNOSTIC, 30, -7.845990552899e-01, 2.180968343431e-06, 6.1440e+00, 7.3738e-02,
2DIAGNOSTIC, 31, -7.846162377672e-01, 2.021458834496e-06, 6.2171e+00, 7.3031e-02,
2DIAGNOSTIC, 32, -7.846633569063e-01, 2.671467704850e-06, 6.3105e+00, 9.3398e-02,
2DIAGNOSTIC, 33, -7.846786100827e-01, 3.307033827671e-06, 6.4348e+00, 1.2432e-01,
2DIAGNOSTIC, 34, -7.846805163761e-01, 3.738964727672e-06, 6.5080e+00, 7.3175e-02,
2DIAGNOSTIC, 35, -7.846810570525e-01, 3.924057060595e-06, 6.5921e+00, 8.4163e-02,
2DIAGNOSTIC, 36, -7.846829380040e-01, 3.848886553290e-06, 6.6654e+00, 7.3310e-02,
2DIAGNOSTIC, 37, -7.846890636635e-01, 3.561126436628e-06, 6.7431e+00, 7.7677e-02,
2DIAGNOSTIC, 38, -7.846917472943e-01, 3.081213809372e-06, 6.8162e+00, 7.3070e-02,
2DIAGNOSTIC, 39, -7.847032443312e-01, 2.587561652022e-06, 6.8904e+00, 7.4266e-02,
2DIAGNOSTIC, 40, -7.847186226695e-01, 2.163966636666e-06, 6.9742e+00, 8.3775e-02,
2DIAGNOSTIC, 41, -7.847252637145e-01, 1.828556533853e-06, 7.0887e+00, 1.1446e-01,
2DIAGNOSTIC, 42, -7.847254226531e-01, 1.814160292917e-06, 7.2134e+00, 1.2474e-01,
2DIAGNOSTIC, 43, -7.847254241151e-01, 1.829950232062e-06, 7.2964e+00, 8.2980e-02,
2DIAGNOSTIC, 44, -7.847254252441e-01, 1.756283771616e-06, 7.3794e+00, 8.2984e-02,
2DIAGNOSTIC, 45, -7.847254263027e-01, 1.589440733960e-06, 7.4522e+00, 7.2874e-02,
2DIAGNOSTIC, 46, -7.847254287357e-01, 1.359376200164e-06, 7.5255e+00, 7.3233e-02,
2DIAGNOSTIC, 47, -7.847254377123e-01, 1.124823615438e-06, 7.6073e+00, 8.1829e-02,
DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -7.163432327507e-01, 1.797693134862e+308, 9.4489e+00, 1.8416e+00,
2DIAGNOSTIC, 2, -7.168073976698e-01, 1.797693134862e+308, 9.9147e+00, 4.6577e-01,
2DIAGNOSTIC, 3, -7.171444284536e-01, 1.797693134862e+308, 1.0381e+01, 4.6601e-01,
2DIAGNOSTIC, 4, -7.173811789909e-01, 1.797693134862e+308, 1.0844e+01, 4.6314e-01,
2DIAGNOSTIC, 5, -7.176640338847e-01, 1.797693134862e+308, 1.1267e+01, 4.2317e-01,
2DIAGNOSTIC, 6, -7.179670026738e-01, 1.797693134862e+308, 1.2041e+01, 7.7413e-01,
2DIAGNOSTIC, 7, -7.180042920608e-01, 1.797693134862e+308, 1.2542e+01, 5.0123e-01,
2DIAGNOSTIC, 8, -7.181429177240e-01, 1.797693134862e+308, 1.3053e+01, 5.1036e-01,
2DIAGNOSTIC, 9, -7.182520054790e-01, 1.797693134862e+308, 1.3555e+01, 5.0179e-01,
2DIAGNOSTIC, 10, -7.183304093957e-01, 1.731362983383e-04, 1.4053e+01, 4.9872e-01,
2DIAGNOSTIC, 11, -7.184791512909e-01, 1.306589181830e-04, 1.4586e+01, 5.3279e-01,
2DIAGNOSTIC, 12, -7.186390961619e-01, 1.042069877749e-04, 1.5230e+01, 6.4396e-01,
2DIAGNOSTIC, 13, -7.186693890468e-01, 8.376138708938e-05, 1.5704e+01, 4.7354e-01,
2DIAGNOSTIC, 14, -7.187866386818e-01, 6.877900644749e-05, 1.6268e+01, 5.6441e-01,
2DIAGNOSTIC, 15, -7.188551660402e-01, 5.876998514660e-05, 1.7106e+01, 8.3842e-01,
2DIAGNOSTIC, 16, -7.188567361555e-01, 5.232665098724e-05, 1.7572e+01, 4.6606e-01,
2DIAGNOSTIC, 17, -7.188631802602e-01, 4.297867265811e-05, 1.8042e+01, 4.6951e-01,
2DIAGNOSTIC, 18, -7.188718726784e-01, 3.410451009659e-05, 1.8511e+01, 4.6914e-01,
2DIAGNOSTIC, 19, -7.188824115460e-01, 2.565371094392e-05, 1.8931e+01, 4.1971e-01,
2DIAGNOSTIC, 20, -7.188950865104e-01, 1.755290874248e-05, 1.9340e+01, 4.0930e-01,
2DIAGNOSTIC, 21, -7.189132046331e-01, 1.183061261197e-05, 1.9754e+01, 4.1360e-01,
2DIAGNOSTIC, 22, -7.189395288963e-01, 9.039987921226e-06, 2.0168e+01, 4.1426e-01,
2DIAGNOSTIC, 23, -7.189934610240e-01, 7.178310167111e-06, 2.0711e+01, 5.4331e-01,
2DIAGNOSTIC, 24, -7.190021722995e-01, 6.955431171025e-06, 2.1293e+01, 5.8177e-01,
2DIAGNOSTIC, 25, -7.190112549113e-01, 7.460886068983e-06, 2.1705e+01, 4.1243e-01,
2DIAGNOSTIC, 26, -7.190206223323e-01, 7.517463109279e-06, 2.2120e+01, 4.1484e-01,
2DIAGNOSTIC, 27, -7.190496810910e-01, 7.487811107001e-06, 2.2708e+01, 5.8786e-01,
2DIAGNOSTIC, 28, -7.190627780165e-01, 7.152395607092e-06, 2.3120e+01, 4.1145e-01,
2DIAGNOSTIC, 29, -7.190841105571e-01, 6.707176459488e-06, 2.3586e+01, 4.6630e-01,
2DIAGNOSTIC, 30, -7.190889043365e-01, 5.997925843659e-06, 2.4053e+01, 4.6691e-01,
2DIAGNOSTIC, 31, -7.190892721991e-01, 5.103944986082e-06, 2.4521e+01, 4.6813e-01,
2DIAGNOSTIC, 32, -7.190898822202e-01, 4.194293358954e-06, 2.4989e+01, 4.6807e-01,
2DIAGNOSTIC, 33, -7.190901903486e-01, 3.682502988739e-06, 2.6427e+01, 1.4380e+00,
2DIAGNOSTIC, 34, -7.190901903474e-01, 3.043047658816e-06, 2.7889e+01, 1.4621e+00,
2DIAGNOSTIC, 35, -7.190901903474e-01, 2.344277742910e-06, 2.8417e+01, 5.2767e-01,
2DIAGNOSTIC, 36, -7.190901903474e-01, 1.646999852528e-06, 2.8946e+01, 5.2909e-01,
2DIAGNOSTIC, 37, -7.190901903474e-01, 1.224907206932e-06, 2.9503e+01, 5.5659e-01,
DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -6.508402762893e-01, 1.797693134862e+308, 3.4102e+01, 4.5992e+00,
Elapsed time (stage 1): 3.4900e+01

Stage 2
iterations = 100x70x50x0
convergence threshold = 1.0000e-06
convergence window size = 10
number of levels = 4
using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00)
preprocessing: winsorizing the image intensities
Shrink factors (level 1 out of 4): [8, 8, 8]
Shrink factors (level 2 out of 4): [4, 4, 4]
Shrink factors (level 3 out of 4): [2, 2, 2]
Shrink factors (level 4 out of 4): [1, 1, 1]
smoothing sigmas per level: [3, 2, 1, 0]
Using default NONE metricSamplingStrategy

*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) ***

XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
1DIAGNOSTIC, 1, -8.376250713737e-01, 1.797693134862e+308, 1.2758e+00, 1.2758e+00,
1DIAGNOSTIC, 2, -8.531371504681e-01, 1.797693134862e+308, 1.3626e+00, 8.6750e-02,
1DIAGNOSTIC, 3, -8.657266390765e-01, 1.797693134862e+308, 1.4491e+00, 8.6489e-02,
1DIAGNOSTIC, 4, -8.772631143773e-01, 1.797693134862e+308, 1.5340e+00, 8.4912e-02,
1DIAGNOSTIC, 5, -8.875557456634e-01, 1.797693134862e+308, 1.6194e+00, 8.5472e-02,
1DIAGNOSTIC, 6, -8.959023452686e-01, 1.797693134862e+308, 1.7054e+00, 8.5987e-02,
1DIAGNOSTIC, 7, -9.028088292945e-01, 1.797693134862e+308, 1.7930e+00, 8.7578e-02,
1DIAGNOSTIC, 8, -9.079280957096e-01, 1.797693134862e+308, 1.8820e+00, 8.8978e-02,
1DIAGNOSTIC, 9, -9.118079133356e-01, 1.797693134862e+308, 1.9693e+00, 8.7339e-02,
1DIAGNOSTIC, 10, -9.153009185782e-01, 5.519369598901e-03, 2.0569e+00, 8.7603e-02,
1DIAGNOSTIC, 11, -9.183174472460e-01, 4.172842601609e-03, 2.1468e+00, 8.9845e-02,
1DIAGNOSTIC, 12, -9.213216056981e-01, 3.170717062608e-03, 2.2354e+00, 8.8610e-02,
1DIAGNOSTIC, 13, -9.244367179176e-01, 2.421199123735e-03, 2.3239e+00, 8.8491e-02,
1DIAGNOSTIC, 14, -9.270286162939e-01, 1.878580352587e-03, 2.4124e+00, 8.8506e-02,
1DIAGNOSTIC, 15, -9.289204563110e-01, 1.493487952103e-03, 2.5004e+00, 8.8053e-02,
1DIAGNOSTIC, 16, -9.307739466704e-01, 1.220325763687e-03, 2.5893e+00, 8.8824e-02,
1DIAGNOSTIC, 17, -9.323685920384e-01, 1.023875065275e-03, 2.6785e+00, 8.9253e-02,
1DIAGNOSTIC, 18, -9.342723775921e-01, 8.767762495069e-04, 2.7674e+00, 8.8886e-02,
1DIAGNOSTIC, 19, -9.357731531851e-01, 7.521603040382e-04, 2.8562e+00, 8.8766e-02,
1DIAGNOSTIC, 20, -9.373079996875e-01, 6.488216345590e-04, 2.9446e+00, 8.8395e-02,
1DIAGNOSTIC, 21, -9.388663583570e-01, 5.628511590796e-04, 3.0334e+00, 8.8794e-02,
1DIAGNOSTIC, 22, -9.401716375647e-01, 4.927576658441e-04, 3.1218e+00, 8.8469e-02,
1DIAGNOSTIC, 23, -9.406972398859e-01, 4.316026594929e-04, 3.2116e+00, 8.9768e-02,
1DIAGNOSTIC, 24, -9.420621573318e-01, 3.865059117286e-04, 3.3006e+00, 8.9041e-02,
1DIAGNOSTIC, 25, -9.430056793233e-01, 3.436179894610e-04, 3.3903e+00, 8.9694e-02,
1DIAGNOSTIC, 26, -9.435815257231e-01, 3.005396370210e-04, 3.4787e+00, 8.8332e-02,
1DIAGNOSTIC, 27, -9.444849835084e-01, 2.610031724841e-04, 3.5681e+00, 8.9417e-02,
1DIAGNOSTIC, 28, -9.456511814715e-01, 2.336208163710e-04, 3.6563e+00, 8.8242e-02,
1DIAGNOSTIC, 29, -9.461071169316e-01, 2.066466103068e-04, 3.7464e+00, 9.0064e-02,
1DIAGNOSTIC, 30, -9.471078179579e-01, 1.879480088354e-04, 3.8353e+00, 8.8925e-02,
1DIAGNOSTIC, 31, -9.475274041852e-01, 1.722305346724e-04, 3.9242e+00, 8.8878e-02,
1DIAGNOSTIC, 32, -9.481944799794e-01, 1.603583198232e-04, 4.0133e+00, 8.9159e-02,
1DIAGNOSTIC, 33, -9.483014930919e-01, 1.396543524742e-04, 4.1021e+00, 8.8785e-02,
1DIAGNOSTIC, 34, -9.488715095851e-01, 1.244916197602e-04, 4.1923e+00, 9.0209e-02,
1DIAGNOSTIC, 35, -9.488152363385e-01, 1.061975068052e-04, 4.2801e+00, 8.7765e-02,
1DIAGNOSTIC, 36, -9.493520066230e-01, 8.838325834074e-05, 4.3684e+00, 8.8263e-02,
1DIAGNOSTIC, 37, -9.496332297608e-01, 7.281519564712e-05, 4.4576e+00, 8.9211e-02,
1DIAGNOSTIC, 38, -9.500372381286e-01, 6.390544638402e-05, 4.5467e+00, 8.9119e-02,
1DIAGNOSTIC, 39, -9.501841079103e-01, 5.402991282614e-05, 4.6362e+00, 8.9505e-02,
1DIAGNOSTIC, 40, -9.506805651258e-01, 5.106743478905e-05, 4.7240e+00, 8.7836e-02,
1DIAGNOSTIC, 41, -9.507227082491e-01, 4.673058640606e-05, 4.8126e+00, 8.8582e-02,
1DIAGNOSTIC, 42, -9.512627167393e-01, 4.703713055706e-05, 4.9008e+00, 8.8222e-02,
1DIAGNOSTIC, 43, -9.513124482994e-01, 4.386009542440e-05, 4.9896e+00, 8.8773e-02,
1DIAGNOSTIC, 44, -9.516993586471e-01, 4.345383591545e-05, 5.0782e+00, 8.8538e-02,
1DIAGNOSTIC, 45, -9.518973153376e-01, 3.983580122167e-05, 5.1667e+00, 8.8567e-02,
1DIAGNOSTIC, 46, -9.525859517435e-01, 4.074156407684e-05, 5.2566e+00, 8.9906e-02,
1DIAGNOSTIC, 47, -9.522387527851e-01, 3.720477565631e-05, 5.3457e+00, 8.9069e-02,
1DIAGNOSTIC, 48, -9.526210729996e-01, 3.544908154243e-05, 5.4342e+00, 8.8479e-02,
1DIAGNOSTIC, 49, -9.526136758066e-01, 3.120382437612e-05, 5.5236e+00, 8.9411e-02,
1DIAGNOSTIC, 50, -9.525212882494e-01, 2.665815878812e-05, 5.6126e+00, 8.9012e-02,
1DIAGNOSTIC, 51, -9.525256622609e-01, 2.001492966890e-05, 5.7277e+00, 1.1511e-01,
1DIAGNOSTIC, 52, -9.526749238429e-01, 1.585471649186e-05, 5.8165e+00, 8.8773e-02,
1DIAGNOSTIC, 53, -9.529210801876e-01, 1.204662613739e-05, 5.9057e+00, 8.9188e-02,
1DIAGNOSTIC, 54, -9.525802286766e-01, 7.493436306422e-06, 5.9952e+00, 8.9492e-02,
1DIAGNOSTIC, 55, -9.526256918808e-01, 3.789271362447e-06, 6.0862e+00, 9.1059e-02,
1DIAGNOSTIC, 56, -9.528582799845e-01, 4.987834143263e-06, 6.1755e+00, 8.9225e-02,
1DIAGNOSTIC, 57, -9.526894983150e-01, 2.818786095628e-06, 6.2636e+00, 8.8191e-02,
1DIAGNOSTIC, 58, -9.525488383335e-01, 1.798340018982e-06, 6.3545e+00, 9.0823e-02,
1DIAGNOSTIC, 59, -9.527500970863e-01, 1.772990208839e-06, 6.4482e+00, 9.3715e-02,
1DIAGNOSTIC, 60, -9.529350233228e-01, 2.074808315815e-06, 6.5393e+00, 9.1159e-02,
1DIAGNOSTIC, 61, -9.527073386891e-01, 1.029738627221e-06, 6.6284e+00, 8.9111e-02,
1DIAGNOSTIC, 62, -9.529034445709e-01, 1.682760987151e-06, 6.7259e+00, 9.7425e-02,
1DIAGNOSTIC, 63, -9.529258967365e-01, 3.550654766746e-06, 6.8175e+00, 9.1619e-02,
1DIAGNOSTIC, 64, -9.526327108042e-01, 2.027632079918e-06, 6.9078e+00, 9.0282e-02,
1DIAGNOSTIC, 65, -9.525585783590e-01, 2.617981470741e-07, 6.9978e+00, 9.0061e-02,
XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
1DIAGNOSTIC, 1, -8.691139211963e-01, 1.797693134862e+308, 8.8035e+00, 1.8056e+00,
1DIAGNOSTIC, 2, -8.763469540773e-01, 1.797693134862e+308, 9.3212e+00, 5.1776e-01,
1DIAGNOSTIC, 3, -8.820872492222e-01, 1.797693134862e+308, 9.8406e+00, 5.1933e-01,
1DIAGNOSTIC, 4, -8.872318127945e-01, 1.797693134862e+308, 1.0363e+01, 5.2289e-01,
1DIAGNOSTIC, 5, -8.920399474731e-01, 1.797693134862e+308, 1.0958e+01, 5.9469e-01,
1DIAGNOSTIC, 6, -8.962214583343e-01, 1.797693134862e+308, 1.1495e+01, 5.3710e-01,
1DIAGNOSTIC, 7, -8.997828512724e-01, 1.797693134862e+308, 1.2038e+01, 5.4317e-01,
1DIAGNOSTIC, 8, -9.030830868676e-01, 1.797693134862e+308, 1.2573e+01, 5.3481e-01,
1DIAGNOSTIC, 9, -9.058634538070e-01, 1.797693134862e+308, 1.3111e+01, 5.3735e-01,
1DIAGNOSTIC, 10, -9.085016678123e-01, 2.758064307573e-03, 1.3675e+01, 5.6490e-01,
1DIAGNOSTIC, 11, -9.108718050688e-01, 2.212311709517e-03, 1.4206e+01, 5.3013e-01,
1DIAGNOSTIC, 12, -9.126660843438e-01, 1.797141897160e-03, 1.4755e+01, 5.4901e-01,
1DIAGNOSTIC, 13, -9.147841755073e-01, 1.474571873469e-03, 1.5288e+01, 5.3378e-01,
1DIAGNOSTIC, 14, -9.163364441228e-01, 1.214411477149e-03, 1.5824e+01, 5.3586e-01,
1DIAGNOSTIC, 15, -9.178338536723e-01, 1.010188396792e-03, 1.6409e+01, 5.8482e-01,
1DIAGNOSTIC, 16, -9.191499400536e-01, 8.467588210834e-04, 1.6943e+01, 5.3391e-01,
1DIAGNOSTIC, 17, -9.205940481825e-01, 7.168720153272e-04, 1.7479e+01, 5.3626e-01,
1DIAGNOSTIC, 18, -9.218636399256e-01, 6.145620683546e-04, 1.8015e+01, 5.3542e-01,
1DIAGNOSTIC, 19, -9.230920623644e-01, 5.318960419938e-04, 1.8550e+01, 5.3523e-01,
1DIAGNOSTIC, 20, -9.243803208156e-01, 4.693709394600e-04, 1.9114e+01, 5.6378e-01,
1DIAGNOSTIC, 21, -9.254782157894e-01, 4.206450253627e-04, 1.9699e+01, 5.8492e-01,
1DIAGNOSTIC, 22, -9.264828834247e-01, 3.765180377929e-04, 2.0245e+01, 5.4636e-01,
1DIAGNOSTIC, 23, -9.275290500847e-01, 3.438803954668e-04, 2.0892e+01, 6.4672e-01,
1DIAGNOSTIC, 24, -9.284723620054e-01, 3.140125557901e-04, 2.1462e+01, 5.7061e-01,
1DIAGNOSTIC, 25, -9.294190660070e-01, 2.874354836312e-04, 2.2104e+01, 6.4179e-01,
1DIAGNOSTIC, 26, -9.302157438330e-01, 2.610340427282e-04, 2.2638e+01, 5.3350e-01,
1DIAGNOSTIC, 27, -9.309656605494e-01, 2.372705305919e-04, 2.3199e+01, 5.6107e-01,
1DIAGNOSTIC, 28, -9.316679609772e-01, 2.146773771275e-04, 2.3733e+01, 5.3453e-01,
1DIAGNOSTIC, 29, -9.323206142258e-01, 1.934127050317e-04, 2.4286e+01, 5.5268e-01,
1DIAGNOSTIC, 30, -9.330587121793e-01, 1.762057484625e-04, 2.4867e+01, 5.8104e-01,
1DIAGNOSTIC, 31, -9.336135308261e-01, 1.599181623806e-04, 2.5442e+01, 5.7518e-01,
1DIAGNOSTIC, 32, -9.341125639713e-01, 1.440534270066e-04, 2.6006e+01, 5.6402e-01,
1DIAGNOSTIC, 33, -9.346469402192e-01, 1.303395324095e-04, 2.6589e+01, 5.8269e-01,
1DIAGNOSTIC, 34, -9.352369480730e-01, 1.189697326132e-04, 2.7175e+01, 5.8615e-01,
1DIAGNOSTIC, 35, -9.356090291846e-01, 1.085500389939e-04, 2.7772e+01, 5.9673e-01,
1DIAGNOSTIC, 36, -9.362744609860e-01, 1.009832887251e-04, 2.8370e+01, 5.9795e-01,
1DIAGNOSTIC, 37, -9.367057010724e-01, 9.405507201313e-05, 2.9087e+01, 7.1705e-01,
1DIAGNOSTIC, 38, -9.372197586666e-01, 8.844024462605e-05, 2.9654e+01, 5.6692e-01,
1DIAGNOSTIC, 39, -9.377005661975e-01, 8.362301320291e-05, 3.0257e+01, 6.0346e-01,
1DIAGNOSTIC, 40, -9.381107062121e-01, 7.993918714180e-05, 3.0844e+01, 5.8740e-01,
1DIAGNOSTIC, 41, -9.385057893553e-01, 7.597679057547e-05, 3.1387e+01, 5.4230e-01,
1DIAGNOSTIC, 42, -9.389837810144e-01, 7.212673578581e-05, 3.2006e+01, 6.1973e-01,
1DIAGNOSTIC, 43, -9.393849343515e-01, 6.824929012561e-05, 3.2572e+01, 5.6548e-01,
1DIAGNOSTIC, 44, -9.398850082103e-01, 6.570360299208e-05, 3.3189e+01, 6.1659e-01,
1DIAGNOSTIC, 45, -9.403446426543e-01, 6.264506762452e-05, 3.3762e+01, 5.7377e-01,
1DIAGNOSTIC, 46, -9.408546913092e-01, 6.161923355978e-05, 3.4372e+01, 6.1011e-01,
1DIAGNOSTIC, 47, -9.413200279651e-01, 6.059510506381e-05, 3.4970e+01, 5.9711e-01,
1DIAGNOSTIC, 48, -9.419002397506e-01, 6.082218098327e-05, 3.5584e+01, 6.1472e-01,
1DIAGNOSTIC, 49, -9.422995269185e-01, 6.072481938549e-05, 3.6188e+01, 6.0340e-01,
1DIAGNOSTIC, 50, -9.427373601151e-01, 6.005070857681e-05, 3.6732e+01, 5.4413e-01,
1DIAGNOSTIC, 51, -9.430098945605e-01, 5.767045657930e-05, 3.7284e+01, 5.5266e-01,
1DIAGNOSTIC, 52, -9.434486965692e-01, 5.530142694566e-05, 3.7831e+01, 5.4616e-01,
1DIAGNOSTIC, 53, -9.438205355421e-01, 5.217127961950e-05, 3.8383e+01, 5.5282e-01,
1DIAGNOSTIC, 54, -9.444393573942e-01, 5.051670798463e-05, 3.8923e+01, 5.3981e-01,
1DIAGNOSTIC, 55, -9.447691653949e-01, 4.845411134621e-05, 3.9475e+01, 5.5152e-01,
1DIAGNOSTIC, 56, -9.452467478656e-01, 4.726566975616e-05, 4.0040e+01, 5.6492e-01,
1DIAGNOSTIC, 57, -9.454959494584e-01, 4.540692797805e-05, 4.0592e+01, 5.5207e-01,
1DIAGNOSTIC, 58, -9.458307625053e-01, 4.410362653879e-05, 4.1255e+01, 6.6360e-01,
1DIAGNOSTIC, 59, -9.460991677709e-01, 4.205836186207e-05, 4.1915e+01, 6.6003e-01,
1DIAGNOSTIC, 60, -9.463488106737e-01, 3.957559455760e-05, 4.2477e+01, 5.6194e-01,
1DIAGNOSTIC, 61, -9.465249753117e-01, 3.564264226308e-05, 4.3037e+01, 5.5958e-01,
1DIAGNOSTIC, 62, -9.467903348943e-01, 3.192786735682e-05, 4.3792e+01, 7.5546e-01,
1DIAGNOSTIC, 63, -9.469413641649e-01, 2.778082134461e-05, 4.4415e+01, 6.2248e-01,
1DIAGNOSTIC, 64, -9.471889981237e-01, 2.526511497922e-05, 4.5065e+01, 6.5000e-01,
1DIAGNOSTIC, 65, -9.472379639742e-01, 2.217179841350e-05, 4.5622e+01, 5.5681e-01,
1DIAGNOSTIC, 66, -9.476561799020e-01, 2.124230185891e-05, 4.6158e+01, 5.3685e-01,
1DIAGNOSTIC, 67, -9.477247421477e-01, 1.972322014232e-05, 4.6711e+01, 5.5201e-01,
1DIAGNOSTIC, 68, -9.481346793901e-01, 1.973469861477e-05, 4.7258e+01, 5.4708e-01,
1DIAGNOSTIC, 69, -9.480767400014e-01, 1.877959967976e-05, 4.7799e+01, 5.4187e-01,
1DIAGNOSTIC, 70, -9.484366217504e-01, 1.877070106655e-05, 4.8349e+01, 5.4947e-01,
XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
1DIAGNOSTIC, 1, -8.289217521509e-01, 1.797693134862e+308, 5.3987e+01, 5.6380e+00,
1DIAGNOSTIC, 2, -8.315988390917e-01, 1.797693134862e+308, 5.7677e+01, 3.6904e+00,
1DIAGNOSTIC, 3, -8.343739901141e-01, 1.797693134862e+308, 6.1344e+01, 3.6666e+00,
1DIAGNOSTIC, 4, -8.373346416118e-01, 1.797693134862e+308, 6.4889e+01, 3.5448e+00,
1DIAGNOSTIC, 5, -8.398252111407e-01, 1.797693134862e+308, 6.8732e+01, 3.8433e+00,
1DIAGNOSTIC, 6, -8.421174823119e-01, 1.797693134862e+308, 7.2245e+01, 3.5130e+00,
1DIAGNOSTIC, 7, -8.441799998254e-01, 1.797693134862e+308, 7.5726e+01, 3.4807e+00,
1DIAGNOSTIC, 8, -8.460988025303e-01, 1.797693134862e+308, 7.9354e+01, 3.6285e+00,
1DIAGNOSTIC, 9, -8.479202019309e-01, 1.797693134862e+308, 8.3181e+01, 3.8262e+00,
1DIAGNOSTIC, 10, -8.495898649348e-01, 1.584007056080e-03, 8.6815e+01, 3.6346e+00,
1DIAGNOSTIC, 11, -8.509409787725e-01, 1.334014102470e-03, 9.0423e+01, 3.6081e+00,
1DIAGNOSTIC, 12, -8.521789544568e-01, 1.115679988074e-03, 9.4131e+01, 3.7079e+00,
1DIAGNOSTIC, 13, -8.533736699485e-01, 9.323106084492e-04, 9.7799e+01, 3.6675e+00,
1DIAGNOSTIC, 14, -8.545455998225e-01, 7.891709091944e-04, 1.0153e+02, 3.7270e+00,
1DIAGNOSTIC, 15, -8.555922129968e-01, 6.717807634951e-04, 1.0509e+02, 3.5641e+00,
1DIAGNOSTIC, 16, -8.564686480016e-01, 5.736748128824e-04, 1.0882e+02, 3.7315e+00,
1DIAGNOSTIC, 17, -8.574361673532e-01, 4.939267727576e-04, 1.1251e+02, 3.6935e+00,
1DIAGNOSTIC, 18, -8.581706862856e-01, 4.264590619071e-04, 1.1621e+02, 3.6996e+00,
1DIAGNOSTIC, 19, -8.588905711130e-01, 3.710942793651e-04, 1.1996e+02, 3.7461e+00,
1DIAGNOSTIC, 20, -8.595497043386e-01, 3.256203122637e-04, 1.2403e+02, 4.0746e+00,
1DIAGNOSTIC, 21, -8.602175551681e-01, 2.862012306869e-04, 1.2781e+02, 3.7742e+00,
1DIAGNOSTIC, 22, -8.608205792217e-01, 2.514743157568e-04, 1.3151e+02, 3.6964e+00,
1DIAGNOSTIC, 23, -8.614111916798e-01, 2.220413708455e-04, 1.3520e+02, 3.6957e+00,
1DIAGNOSTIC, 24, -8.620399730696e-01, 1.992243384349e-04, 1.3904e+02, 3.8347e+00,
1DIAGNOSTIC, 25, -8.625614980951e-01, 1.803868942589e-04, 1.4293e+02, 3.8953e+00,
1DIAGNOSTIC, 26, -8.630743272535e-01, 1.637531769194e-04, 1.4674e+02, 3.8096e+00,
1DIAGNOSTIC, 27, -8.635494926029e-01, 1.507170583650e-04, 1.5047e+02, 3.7303e+00,
1DIAGNOSTIC, 28, -8.640054587207e-01, 1.385259038013e-04, 1.5418e+02, 3.7106e+00,
1DIAGNOSTIC, 29, -8.644663584930e-01, 1.276221741803e-04, 1.5786e+02, 3.6742e+00,
1DIAGNOSTIC, 30, -8.648846104817e-01, 1.172945714549e-04, 1.6151e+02, 3.6536e+00,
1DIAGNOSTIC, 31, -8.652602212335e-01, 1.077346751683e-04, 1.6517e+02, 3.6654e+00,
1DIAGNOSTIC, 32, -8.656596885582e-01, 9.899185081678e-05, 1.6897e+02, 3.7961e+00,
1DIAGNOSTIC, 33, -8.660404744051e-01, 9.114288136188e-05, 1.7265e+02, 3.6800e+00,
1DIAGNOSTIC, 34, -8.664178145111e-01, 8.492984497877e-05, 1.7652e+02, 3.8674e+00,
1DIAGNOSTIC, 35, -8.667722568341e-01, 7.931214245819e-05, 1.8026e+02, 3.7407e+00,
1DIAGNOSTIC, 36, -8.671284418700e-01, 7.449434081307e-05, 1.8418e+02, 3.9165e+00,
1DIAGNOSTIC, 37, -8.674599340985e-01, 7.009108597642e-05, 1.8839e+02, 4.2174e+00,
1DIAGNOSTIC, 38, -8.677729592816e-01, 6.595841489232e-05, 1.9229e+02, 3.8986e+00,
1DIAGNOSTIC, 39, -8.680941077239e-01, 6.241541821060e-05, 1.9612e+02, 3.8331e+00,
1DIAGNOSTIC, 40, -8.683383859317e-01, 5.860635231729e-05, 2.0004e+02, 3.9166e+00,
1DIAGNOSTIC, 41, -8.686403034685e-01, 5.489428391503e-05, 2.0406e+02, 4.0207e+00,
1DIAGNOSTIC, 42, -8.689577261435e-01, 5.178453582952e-05, 2.0798e+02, 3.9213e+00,
1DIAGNOSTIC, 43, -8.692010438566e-01, 4.868378251220e-05, 2.1185e+02, 3.8666e+00,
1DIAGNOSTIC, 44, -8.694680325944e-01, 4.595160923880e-05, 2.1583e+02, 3.9773e+00,
1DIAGNOSTIC, 45, -8.697501370334e-01, 4.365308183125e-05, 2.1996e+02, 4.1320e+00,
1DIAGNOSTIC, 46, -8.700033657696e-01, 4.167446233868e-05, 2.2405e+02, 4.0875e+00,
1DIAGNOSTIC, 47, -8.702399530294e-01, 3.980520937913e-05, 2.2779e+02, 3.7479e+00,
1DIAGNOSTIC, 48, -8.704720295271e-01, 3.798155799974e-05, 2.3149e+02, 3.6910e+00,
1DIAGNOSTIC, 49, -8.707147196526e-01, 3.643784131115e-05, 2.3530e+02, 3.8158e+00,
1DIAGNOSTIC, 50, -8.709319746324e-01, 3.452939200623e-05, 2.3917e+02, 3.8674e+00,
Elapsed time (stage 2): 244

Total elapsed time: 309.7

Apply linear transform to T1
antsApplyTransforms -d 3 -i /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.hh0vCEw4zT/ANTS0GenericAffine.mat -o /tmp/tmp.hh0vCEw4zT/T1_norm_lin_atlas_2_5.nii.gz

Apply linear transform to distorted b0
antsApplyTransforms -d 3 -i /INPUTS/b0.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.hh0vCEw4zT/ANTS0GenericAffine.mat -t /tmp/tmp.hh0vCEw4zT/epi_reg_d_ANTS.txt -o /tmp/tmp.hh0vCEw4zT/b0_d_lin_atlas_2_5.nii.gz

Apply nonlinear transform to T1
antsApplyTransforms -d 3 -i /tmp/tmp.hh0vCEw4zT/T1_norm.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.hh0vCEw4zT/ANTS1Warp.nii.gz -t /tmp/tmp.hh0vCEw4zT/ANTS0GenericAffine.mat -o /tmp/tmp.hh0vCEw4zT/T1_norm_nonlin_atlas_2_5.nii.gz

Apply nonlinear transform to distorted b0
antsApplyTransforms -d 3 -i /INPUTS/b0.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.hh0vCEw4zT/ANTS1Warp.nii.gz -t /tmp/tmp.hh0vCEw4zT/ANTS0GenericAffine.mat -t /tmp/tmp.hh0vCEw4zT/epi_reg_d_ANTS.txt -o /tmp/tmp.hh0vCEw4zT/b0_d_nonlin_atlas_2_5.nii.gz

Copying results to results path...

Removing job directory...
Performing inference on FOLD: 1
/extra/pipeline.sh: line 27: 1699 Killed python3.6 /extra/inference.py /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_"$i".nii.gz /extra/dual_channel_unet/num_fold_"$i"total_folds"$NUM_FOLDS"seed_1_num_epochs_100_lr_0.0001_betas(0.9,\ 0.999)weight_decay_1e-05_num_epoch.pth
Performing inference on FOLD: 2
/extra/pipeline.sh: line 27: 1732 Killed python3.6 /extra/inference.py /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_"$i".nii.gz /extra/dual_channel_unet/num_fold_"$i"total_folds"$NUM_FOLDS"seed_1_num_epochs_100_lr_0.0001_betas(0.9,\ 0.999)weight_decay_1e-05_num_epoch.pth
Performing inference on FOLD: 3
Performing inference on FOLD: 4
/extra/pipeline.sh: line 27: 1765 Killed python3.6 /extra/inference.py /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_"$i".nii.gz /extra/dual_channel_unet/num_fold_"$i"total_folds"$NUM_FOLDS"seed_1_num_epochs_100_lr_0.0001_betas(0.9,\ 0.999)weight_decay_1e-05_num_epoch.pth
Performing inference on FOLD: 5
/extra/pipeline.sh: line 27: 1798 Killed python3.6 /extra/inference.py /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_"$i".nii.gz /extra/dual_channel_unet/num_fold_"$i"total_folds"$NUM_FOLDS"seed_1_num_epochs_100_lr_0.0001_betas(0.9,\ 0.999)weight_decay_1e-05_num_epoch.pth
Taking ensemble average
/extra/pipeline.sh: line 27: 1831 Killed python3.6 /extra/inference.py /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_"$i".nii.gz /extra/dual_channel_unet/num_fold_"$i"total_folds"$NUM_FOLDS"seed_1_num_epochs_100_lr_0.0001_betas(0.9,\ 0.999)weight_decay_1e-05_num_epoch.pth
Image Exception : #63 :: No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_*
/extra/pipeline.sh: line 34: 1864 Aborted (core dumped) fslmerge -t /OUTPUTS/b0_u_lin_atlas_2_5_merged.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_*.nii.gz
Image Exception : #63 :: No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_merged
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_merged
/extra/pipeline.sh: line 35: 1865 Aborted (core dumped) fslmaths /OUTPUTS/b0_u_lin_atlas_2_5_merged.nii.gz -Tmean /OUTPUTS/b0_u_lin_atlas_2_5.nii.gz
Applying inverse xform to undistorted b0
file /OUTPUTS/b0_u_lin_atlas_2_5.nii.gz does not exist .
terminate called after throwing an instance of 'itk::ExceptionObject'
what(): /home/local/VANDERBILT/blaberj/ANTS_13_FEB_2019/bin/ants/ITKv5/Modules/Core/Common/src/itkProcessObject.cxx:1412:
itk::ERROR: ResampleImageFilter(0x2927ff0): Input Primary is required but not set.
Applying slight smoothing to distorted b0
/extra/pipeline.sh: line 39: 1866 Aborted (core dumped) antsApplyTransforms -d 3 -i /OUTPUTS/b0_u_lin_atlas_2_5.nii.gz -r /INPUTS/b0.nii.gz -n BSpline -t [/OUTPUTS/epi_reg_d_ANTS.txt,1] -t [/OUTPUTS/ANTS0GenericAffine.mat,1] -o /OUTPUTS/b0_u.nii.gz
Running topup
Image Exception : #63 :: No image files match: /OUTPUTS/b0_u
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: /OUTPUTS/b0_u
/extra/pipeline.sh: line 47: 1872 Aborted (core dumped) fslmerge -t /OUTPUTS/b0_all.nii.gz /OUTPUTS/b0_d_smooth.nii.gz /OUTPUTS/b0_u.nii.gz
Image Exception : #63 :: No image files match: /OUTPUTS/b0_all
FINISHED!!!
Image Exception : #22 :: Failed to read volume /OUTPUTS/b0_all.nii.gz
Error : No image files match: /OUTPUTS/b0_all

Part of FSL (ID: 6.0.1)
topup

Usage:
topup --imain=<some 4D image> --datain= --config= --out=my_topup_results

Compulsory arguments (You MUST set one or more of):
--imain name of 4D file with images
--datain name of text file with PE directions/times

Optional arguments (You may optionally specify one or more of):
--out base-name of output files (spline coefficients (Hz) and movement parameters)
--fout name of image file with field (Hz)
--iout name of 4D image file with unwarped images
--logout Name of log-file
--warpres (approximate) resolution (in mm) of warp basis for the different sub-sampling levels, default 10
--subsamp sub-sampling scheme, default 1
--fwhm FWHM (in mm) of gaussian smoothing kernel, default 8
--config Name of config file specifying command line arguments
--miter Max # of non-linear iterations, default 5
--lambda Weight of regularisation, default depending on --ssqlambda and --regmod switches. See user documetation.
--ssqlambda If set (=1), lambda is weighted by current ssq, default 1
--regmod Model for regularisation of warp-field [membrane_energy bending_energy], default bending_energy
--estmov Estimate movements if set, default 1 (true)
--minmet Minimisation method 0=Levenberg-Marquardt, 1=Scaled Conjugate Gradient, default 0 (LM)
--splineorder Order of spline, 2->Qadratic spline, 3->Cubic spline. Default=3
--numprec Precision for representing Hessian, double or float. Default double
--interp Image interpolation model, linear or spline. Default spline
--scale If set (=1), the images are individually scaled to a common mean, default 0 (false)
--regrid If set (=1), the calculations are done in a different grid, default 1 (true)
-h,--help display help info
-v,--verbose Print diagonostic information while running
-h,--help display help info

Failed to read volume /OUTPUTS/b0_all.nii.gz
Error : No image files match: /OUTPUTS/b0_all

[Meryam1985]

When i tested another image with sub_acq-AP_dwi.val :
0 0 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 0 1000 1000 1000 1000
i get this error

base) besma@besma-ThinkCentre-M720t:/media/besma/docc/ses-001use_sb0/anat$ sudo docker run --rm \

-v /media/besma/docc/ses-001use_sb0/anat/:/INPUTS/
-v /media/besma/docc/ses-001use_sb0/anat/out:/OUTPUTS/
-v /media/besma/docc/freesurfer-linux-centos6_x86_64-7.1.1/freesurfer/license.txt:/extra/freesurfer/license.txt
--user $(id -u):$(id -g)
justinblaber/synb0_25iso
[sudo] password for besma:

---

INPUTS:
Distorted b0 path: /INPUTS/b0.nii.gz
T1 path: /INPUTS/T1.nii.gz
T1 atlas path: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz
T1 2.5 iso atlas path: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz
Results path: /OUTPUTS

Job directory path: /tmp/tmp.2rM5DDNdfq

Making results directory...

Normalizing T1
normalize_T1.sh /INPUTS/T1.nii.gz /tmp/tmp.2rM5DDNdfq/T1_N3.nii.gz /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz

INPUTS:
T1 path: /INPUTS/T1.nii.gz
T1 N3 path: /tmp/tmp.2rM5DDNdfq/T1_N3.nii.gz
T1 normalized path: /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz

Job directory path: /tmp/tmp.fF9M9wgwDa

mri_convert /tmp/tmp.fF9M9wgwDa/T1.nii.gz /tmp/tmp.fF9M9wgwDa/T1.mgz
mri_convert.bin /tmp/tmp.fF9M9wgwDa/T1.nii.gz /tmp/tmp.fF9M9wgwDa/T1.mgz
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /tmp/tmp.fF9M9wgwDa/T1.nii.gz...
TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (0.998395, -0.0241115, 0.0512432)
j_ras = (0.0242415, 0.999704, -0.00191732)
k_ras = (-0.0511818, 0.00315645, 0.998684)
writing to /tmp/tmp.fF9M9wgwDa/T1.mgz...

mri_nu_correct.mni --i /tmp/tmp.fF9M9wgwDa/T1.mgz --o /tmp/tmp.fF9M9wgwDa/T1_N3.mgz --n 2
/
/extra/freesurfer/bin/mri_nu_correct.mni
--i /tmp/tmp.fF9M9wgwDa/T1.mgz --o /tmp/tmp.fF9M9wgwDa/T1_N3.mgz --n 2
nIters 2
$Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $
Linux a13218ba6684 5.11.0-27-generic #29~20.04.1-Ubuntu SMP Wed Aug 11 15:58:17 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
Fri Sep 3 15:51:11 UTC 2021
Program nu_correct, built from:
Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34
/usr/bin/bc
tmpdir is /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21
/
mri_convert /tmp/tmp.fF9M9wgwDa/T1.mgz /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu0.mnc -odt float
mri_convert.bin /tmp/tmp.fF9M9wgwDa/T1.mgz /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu0.mnc -odt float
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /tmp/tmp.fF9M9wgwDa/T1.mgz...
TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (0.998395, -0.0241115, 0.0512432)
j_ras = (0.0242415, 0.999704, -0.00191732)
k_ras = (-0.0511818, 0.00315645, 0.998684)
writing to /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu0.mnc...

---

Iteration 1 Fri Sep 3 15:51:13 UTC 2021
nu_correct -clobber /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu0.mnc /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu1.mnc -tmpdir /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/0/
[@a13218ba6684:/] [2021-09-03 15:51:13] running:
/extra/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/0/ /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu0.mnc /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu1.imp

Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Number of iterations: 24
CV of field change: 0.000955262

---

Iteration 2 Fri Sep 3 15:51:41 UTC 2021
nu_correct -clobber /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu1.mnc /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc -tmpdir /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/1/
[@a13218ba6684:/] [2021-09-03 15:51:41] running:
/extra/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/1/ /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu1.mnc /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.imp

Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Processing:.....................................................Done
Number of iterations: 18
CV of field change: 0.000949143

mri_binarize --i /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc --min -1 --o /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz

$Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $
cwd /
cmdline mri_binarize.bin --i /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc --min -1 --o /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz
sysname Linux
hostname a13218ba6684
machine x86_64
user UNKNOWN

input /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc
frame 0
nErode3d 0
nErode2d 0
output /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz
Binarizing based on threshold
min -1
max +infinity
binval 1
binvalnot 0
fstart = 0, fend = 0, nframes = 1
Found 12779520 values in range
Counting number of voxels in first frame
Found 12779520 voxels in final mask
Count: 12779520 12779520.000000 12779520 100.000000
mri_binarize done
mri_segstats --id 1 --seg /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz --i /tmp/tmp.fF9M9wgwDa/T1.mgz --sum /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/sum.junk --avgwf /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/input.mean.dat

$Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
cwd
cmdline mri_segstats --id 1 --seg /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz --i /tmp/tmp.fF9M9wgwDa/T1.mgz --sum /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/sum.junk --avgwf /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/input.mean.dat
sysname Linux
hostname a13218ba6684
machine x86_64
user UNKNOWN
UseRobust 0
Loading /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz
Loading /tmp/tmp.fF9M9wgwDa/T1.mgz
Voxel Volume is 1 mm^3
Generating list of segmentation ids
Found 1 segmentations
Computing statistics for each segmentation

Reporting on 1 segmentations
Using PrintSegStat
Computing spatial average of each frame
0
Writing to /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/input.mean.dat
mri_segstats done
mri_segstats --id 1 --seg /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz --i /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc --sum /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/sum.junk --avgwf /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/output.mean.dat

$Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
cwd
cmdline mri_segstats --id 1 --seg /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz --i /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc --sum /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/sum.junk --avgwf /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/output.mean.dat
sysname Linux
hostname a13218ba6684
machine x86_64
user UNKNOWN
UseRobust 0
Loading /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/ones.mgz
Loading /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc
Voxel Volume is 1 mm^3
Generating list of segmentation ids
Found 1 segmentations
Computing statistics for each segmentation

Reporting on 1 segmentations
Using PrintSegStat
Computing spatial average of each frame
0
Writing to /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/output.mean.dat
mri_segstats done
mris_calc -o /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc mul 1.07153025288276934311
Saving result to '/tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc' (type = MINC ) [ ok ]
mri_convert /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc /tmp/tmp.fF9M9wgwDa/T1_N3.mgz --like /tmp/tmp.fF9M9wgwDa/T1.mgz --conform
mri_convert.bin /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc /tmp/tmp.fF9M9wgwDa/T1_N3.mgz --like /tmp/tmp.fF9M9wgwDa/T1.mgz --conform
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /tmp/tmp.fF9M9wgwDa/tmp.mri_nu_correct.mni.21/nu2.mnc...
TR=0.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (0.998395, -0.0241115, 0.0512432)
j_ras = (0.0242415, 0.999704, -0.00191732)
k_ras = (-0.0511818, 0.00315645, 0.998684)
INFO: transform src into the like-volume: /tmp/tmp.fF9M9wgwDa/T1.mgz
changing data type from float to uchar (noscale = 0)...
MRIchangeType: Building histogram
writing to /tmp/tmp.fF9M9wgwDa/T1_N3.mgz...

Fri Sep 3 15:52:24 UTC 2021
mri_nu_correct.mni done

mri_convert /tmp/tmp.fF9M9wgwDa/T1_N3.mgz /tmp/tmp.2rM5DDNdfq/T1_N3.nii.gz
mri_convert.bin /tmp/tmp.fF9M9wgwDa/T1_N3.mgz /tmp/tmp.2rM5DDNdfq/T1_N3.nii.gz
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /tmp/tmp.fF9M9wgwDa/T1_N3.mgz...
TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (0.998395, -0.0241115, 0.0512432)
j_ras = (0.0242415, 0.999704, -0.00191732)
k_ras = (-0.0511818, 0.00315645, 0.998684)
writing to /tmp/tmp.2rM5DDNdfq/T1_N3.nii.gz...

mri_normalize -g 1 -mprage /tmp/tmp.fF9M9wgwDa/T1_N3.mgz /tmp/tmp.fF9M9wgwDa/T1_norm.mgz
using max gradient = 1.000
assuming input volume is MGH (Van der Kouwe) MP-RAGE
reading from /tmp/tmp.fF9M9wgwDa/T1_N3.mgz...
normalizing image...
processing without aseg, no1d=0
MRInormInit():
no Talairach xform detected - using skull bounding box to determine origin
MRInormalize():
MRIsplineNormalize(): npeaks = 1
ERROR: number of peaks must be > 1 for spline
1d normalization failed - trying no1d...
building Voronoi diagram...
performing soap bubble smoothing, sigma = 8...

Iterating 2 times

3d normalization pass 1 of 2
white matter peak found at 110
white matter peak found at 90
gm peak at 72 (72), valley at 55 (55)
csf peak at 38, setting threshold to 60
building Voronoi diagram...
performing soap bubble smoothing, sigma = 8...

3d normalization pass 2 of 2
white matter peak found at 110
white matter peak found at 110
gm peak at 73 (73), valley at 41 (41)
csf peak at 37, setting threshold to 61
building Voronoi diagram...
performing soap bubble smoothing, sigma = 8...
Done iterating ---------------------------------
******* WARNING - forcing scaling of values to prevent cropping of input [ 0, 263]
***** DISABLING forcing and not doing scaling ********
writing output to /tmp/tmp.fF9M9wgwDa/T1_norm.mgz
3D bias adjustment took 1 minutes and 15 seconds.

mri_convert /tmp/tmp.fF9M9wgwDa/T1_norm.mgz /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz
mri_convert.bin /tmp/tmp.fF9M9wgwDa/T1_norm.mgz /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /tmp/tmp.fF9M9wgwDa/T1_norm.mgz...
TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (0.998395, -0.0241115, 0.0512432)
j_ras = (0.0242415, 0.999704, -0.00191732)
k_ras = (-0.0511818, 0.00315645, 0.998684)
writing to /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz...

Removing job directory...

Skull stripping T1
bet /INPUTS/T1.nii.gz /tmp/tmp.2rM5DDNdfq/T1_mask.nii.gz -R

epi_reg distorted b0 to T1
epi_reg --epi=/INPUTS/b0.nii.gz --t1=/INPUTS/T1.nii.gz --t1brain=/tmp/tmp.2rM5DDNdfq/T1_mask.nii.gz --out=/tmp/tmp.2rM5DDNdfq/epi_reg_d
Running FAST segmentation
FLIRT pre-alignment
Running BBR
Image Exception : #75 :: 3D only method called by higher-dimensional volume.
3D only method called by higher-dimensional volume.
Could not open matrix file /tmp/tmp.2rM5DDNdfq/epi_reg_d.mat
/extra/fsl/bin/epi_reg: line 399: 1206 Segmentation fault (core dumped) $FSLDIR/bin/applywarp -i ${vepi} -r ${vrefhead} -o ${vout} --premat=${vout}.mat --interp=spline

converting FSL transform to ANTS transform
c3d_affine_tool -ref /INPUTS/T1.nii.gz -src /INPUTS/b0.nii.gz /tmp/tmp.2rM5DDNdfq/epi_reg_d.mat -fsl2ras -oitk /tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt
terminate called after throwing an instance of 'char const*'

ANTS syn registration
antsRegistrationSyNQuick.sh -d 3 -f /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz -m /INPUTS/T1.nii.gz -o /tmp/tmp.2rM5DDNdfq/ANTS
/extra/prepare_input.sh: line 60: 1401 Aborted (core dumped) c3d_affine_tool -ref /INPUTS/T1.nii.gz -src /INPUTS/b0.nii.gz /tmp/tmp.2rM5DDNdfq/epi_reg_d.mat -fsl2ras -oitk /tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt

---

Mapping parameters

ANTSPATH is /extra/ANTS/bin/ants/bin/

Dimensionality: 3
Output name prefix: /tmp/tmp.2rM5DDNdfq/ANTS
Fixed images: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz
Moving images: /INPUTS/T1.nii.gz
Mask images:
Initial transforms:
Number of threads: 1
Spline distance: 26
Transform type: s
MI histogram bins: 32
Precision: d
Use histogram matching 0

antsRegistration call:

/extra/ANTS/bin/ants/bin//antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [/tmp/tmp.2rM5DDNdfq/ANTS,/tmp/tmp.2rM5DDNdfq/ANTSWarped.nii.gz,/tmp/tmp.2rM5DDNdfq/ANTSInverseWarped.nii.gz] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [0.005,0.995] --initial-moving-transform [/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1] --transform Rigid[0.1] --metric MI[/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1,32,Regular,0.25] --convergence [1000x500x250x0,1e-6,10] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[0.1] --metric MI[/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1,32,Regular,0.25] --convergence [1000x500x250x0,1e-6,10] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[0.1,3,0] --metric MI[/extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz,/INPUTS/T1.nii.gz,1,32] --convergence [100x70x50x0,1e-6,10] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox

All_Command_lines_OK
Using double precision for computations.

The composite transform comprises the following transforms (in order):

1. Center of mass alignment using fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz and moving image: /INPUTS/T1.nii.gz (type = Euler3DTransform)
   =============================================================================
   number of levels = 4
   number of levels = 4
   number of levels = 4
   fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz
   moving image: /INPUTS/T1.nii.gz
   fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz
   moving image: /INPUTS/T1.nii.gz
   fixed image: /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz
   moving image: /INPUTS/T1.nii.gz
   Dimension = 3
   Number of stages = 3
   Use Histogram Matching false
   Winsorize image intensities true
   Lower quantile = 0.005
   Upper quantile = 0.995
   Stage 1 State
   Image metric = Mattes
   Fixed image = Image (0x2fbc5d0)
   RTTI typeinfo: itk::Image<double, 3u>
   Reference Count: 2
   Modified Time: 1626
   Debug: Off
   Object Name:
   Observers:
   none
   Source: (none)
   Source output name: (none)
   Release Data: Off
   Data Released: False
   Global Release Data: Off
   PipelineMTime: 0
   UpdateMTime: 1429
   RealTimeStamp: 0 seconds
   LargestPossibleRegion:
   Dimension: 3
   Index: [0, 0, 0]
   Size: [193, 229, 193]
   BufferedRegion:
   Dimension: 3
   Index: [0, 0, 0]
   Size: [193, 229, 193]
   RequestedRegion:
   Dimension: 3
   Index: [0, 0, 0]
   Size: [193, 229, 193]
   Spacing: [1, 1, 1]
   Origin: [96, 132, -78]
   Direction:
   -1 0 0
   0 -1 0
   0 0 1

IndexToPointMatrix:
-1 0 0
0 -1 0
0 0 1

PointToIndexMatrix:
-1 0 0
0 -1 0
0 0 1

Inverse Direction:
-1 0 0
0 -1 0
0 0 1

PixelContainer:
ImportImageContainer (0x2fafc60)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 1426
Debug: Off
Object Name:
Observers:
none
Pointer: 0x7f33f5df7010
Container manages memory: true
Size: 8530021
Capacity: 8530021

 Moving image = Image (0x2fe2cb0)

RTTI typeinfo: itk::Image<double, 3u>
Reference Count: 2
Modified Time: 1627
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 1624
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [208, 240, 256]
BufferedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [208, 240, 256]
RequestedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [208, 240, 256]
Spacing: [1, 1, 1]
Origin: [93.0629, 93.8035, -175.398]
Direction:
-0.998395 -0.0242415 0.0511818
0.0241115 -0.999704 -0.00315645
0.0512432 -0.00191732 0.998684

IndexToPointMatrix:
-0.998395 -0.0242415 0.0511818
0.0241115 -0.999704 -0.00315645
0.0512432 -0.00191732 0.998684

PointToIndexMatrix:
-0.998395 0.0241115 0.0512432
-0.0242415 -0.999704 -0.00191732
0.0511818 -0.00315645 0.998684

Inverse Direction:
-0.998395 0.0241115 0.0512432
-0.0242415 -0.999704 -0.00191732
0.0511818 -0.00315645 0.998684

PixelContainer:
ImportImageContainer (0x2fbb560)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 1621
Debug: Off
Object Name:
Observers:
none
Pointer: 0x7f33efc76010
Container manages memory: true
Size: 12779520
Capacity: 12779520

 Weighting = 1
 Sampling strategy = regular
 Number of bins = 32
 Radius = 4
 Sampling percentage  = 0.25

Transform = Rigid
Gradient step = 0.1
Update field sigma (voxel space) = 0
Total field sigma (voxel space) = 0
Update field time sigma = 0
Total field time sigma = 0
Number of time indices = 0
Number of time point samples = 0
Stage 2 State
Image metric = Mattes
Fixed image = Image (0x2fc0710)
RTTI typeinfo: itk::Image<double, 3u>
Reference Count: 2
Modified Time: 2018
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 1821
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [193, 229, 193]
BufferedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [193, 229, 193]
RequestedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [193, 229, 193]
Spacing: [1, 1, 1]
Origin: [96, 132, -78]
Direction:
-1 0 0
0 -1 0
0 0 1

IndexToPointMatrix:
-1 0 0
0 -1 0
0 0 1

PointToIndexMatrix:
-1 0 0
0 -1 0
0 0 1

Inverse Direction:
-1 0 0
0 -1 0
0 0 1

PixelContainer:
ImportImageContainer (0x2fbbca0)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 1818
Debug: Off
Object Name:
Observers:
none
Pointer: 0x7f33ebb61010
Container manages memory: true
Size: 8530021
Capacity: 8530021

 Moving image = Image (0x2fd8af0)

RTTI typeinfo: itk::Image<double, 3u>
Reference Count: 2
Modified Time: 2019
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 2016
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [208, 240, 256]
BufferedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [208, 240, 256]
RequestedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [208, 240, 256]
Spacing: [1, 1, 1]
Origin: [93.0629, 93.8035, -175.398]
Direction:
-0.998395 -0.0242415 0.0511818
0.0241115 -0.999704 -0.00315645
0.0512432 -0.00191732 0.998684

IndexToPointMatrix:
-0.998395 -0.0242415 0.0511818
0.0241115 -0.999704 -0.00315645
0.0512432 -0.00191732 0.998684

PointToIndexMatrix:
-0.998395 0.0241115 0.0512432
-0.0242415 -0.999704 -0.00191732
0.0511818 -0.00315645 0.998684

Inverse Direction:
-0.998395 0.0241115 0.0512432
-0.0242415 -0.999704 -0.00191732
0.0511818 -0.00315645 0.998684

PixelContainer:
ImportImageContainer (0x2fd6a70)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 2013
Debug: Off
Object Name:
Observers:
none
Pointer: 0x7f33e59e0010
Container manages memory: true
Size: 12779520
Capacity: 12779520

 Weighting = 1
 Sampling strategy = regular
 Number of bins = 32
 Radius = 4
 Sampling percentage  = 0.25

Transform = Affine
Gradient step = 0.1
Update field sigma (voxel space) = 0
Total field sigma (voxel space) = 0
Update field time sigma = 0
Total field time sigma = 0
Number of time indices = 0
Number of time point samples = 0
Stage 3 State
Image metric = Mattes
Fixed image = Image (0x2fd6fe0)
RTTI typeinfo: itk::Image<double, 3u>
Reference Count: 2
Modified Time: 2410
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 2213
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [193, 229, 193]
BufferedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [193, 229, 193]
RequestedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [193, 229, 193]
Spacing: [1, 1, 1]
Origin: [96, 132, -78]
Direction:
-1 0 0
0 -1 0
0 0 1

IndexToPointMatrix:
-1 0 0
0 -1 0
0 0 1

PointToIndexMatrix:
-1 0 0
0 -1 0
0 0 1

Inverse Direction:
-1 0 0
0 -1 0
0 0 1

PixelContainer:
ImportImageContainer (0x2fd84b0)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 2210
Debug: Off
Object Name:
Observers:
none
Pointer: 0x7f33e18cb010
Container manages memory: true
Size: 8530021
Capacity: 8530021

 Moving image = Image (0x2fd8fd0)

RTTI typeinfo: itk::Image<double, 3u>
Reference Count: 2
Modified Time: 2411
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 2408
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [208, 240, 256]
BufferedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [208, 240, 256]
RequestedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [208, 240, 256]
Spacing: [1, 1, 1]
Origin: [93.0629, 93.8035, -175.398]
Direction:
-0.998395 -0.0242415 0.0511818
0.0241115 -0.999704 -0.00315645
0.0512432 -0.00191732 0.998684

IndexToPointMatrix:
-0.998395 -0.0242415 0.0511818
0.0241115 -0.999704 -0.00315645
0.0512432 -0.00191732 0.998684

PointToIndexMatrix:
-0.998395 0.0241115 0.0512432
-0.0242415 -0.999704 -0.00191732
0.0511818 -0.00315645 0.998684

Inverse Direction:
-0.998395 0.0241115 0.0512432
-0.0242415 -0.999704 -0.00191732
0.0511818 -0.00315645 0.998684

PixelContainer:
ImportImageContainer (0x2fdb220)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 2405
Debug: Off
Object Name:
Observers:
none
Pointer: 0x7f33db74a010
Container manages memory: true
Size: 12779520
Capacity: 12779520

 Weighting = 1
 Sampling strategy = none
 Number of bins = 32
 Radius = 4
 Sampling percentage  = 1

Transform = SyN
Gradient step = 0.1
Update field sigma (voxel space) = 3
Total field sigma (voxel space) = 0
Update field time sigma = 0
Total field time sigma = 0
Number of time indices = 0
Number of time point samples = 0
Registration using 3 total stages.

Stage 0
iterations = 1000x500x250x0
convergence threshold = 1e-06
convergence window size = 10
number of levels = 4
using the Mattes MI metric (number of bins = 32, weight = 1)
preprocessing: winsorizing the image intensities
Shrink factors (level 1 out of 4): [8, 8, 8]
Shrink factors (level 2 out of 4): [4, 4, 4]
Shrink factors (level 3 out of 4): [2, 2, 2]
Shrink factors (level 4 out of 4): [1, 1, 1]
smoothing sigmas per level: [3, 2, 1, 0]
regular sampling (percentage = 0.25)

*** Running Euler3DTransform registration ***

DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -3.668267683264e-01, 1.797693134862e+308, 1.3953e+00, 1.3953e+00,
2DIAGNOSTIC, 2, -3.682425370891e-01, 1.797693134862e+308, 1.4045e+00, 9.2142e-03,
2DIAGNOSTIC, 3, -3.708280087473e-01, 1.797693134862e+308, 1.4149e+00, 1.0342e-02,
2DIAGNOSTIC, 4, -3.754160408461e-01, 1.797693134862e+308, 1.4246e+00, 9.7771e-03,
2DIAGNOSTIC, 5, -3.800385551961e-01, 1.797693134862e+308, 1.4362e+00, 1.1541e-02,
2DIAGNOSTIC, 6, -3.841154800394e-01, 1.797693134862e+308, 1.4456e+00, 9.4011e-03,
2DIAGNOSTIC, 7, -3.875280387433e-01, 1.797693134862e+308, 1.4552e+00, 9.6550e-03,
2DIAGNOSTIC, 8, -3.980727793176e-01, 1.797693134862e+308, 1.4671e+00, 1.1849e-02,
2DIAGNOSTIC, 9, -4.177670283292e-01, 1.797693134862e+308, 1.4776e+00, 1.0485e-02,
2DIAGNOSTIC, 10, -4.271678092787e-01, 9.466688213236e-03, 1.4907e+00, 1.3124e-02,
2DIAGNOSTIC, 11, -5.531239660542e-01, 1.750887075043e-02, 1.5066e+00, 1.5910e-02,
2DIAGNOSTIC, 12, -5.591275648886e-01, 2.245544636660e-02, 1.5166e+00, 9.9449e-03,
2DIAGNOSTIC, 13, -5.597937334110e-01, 2.465642146472e-02, 1.5281e+00, 1.1537e-02,
2DIAGNOSTIC, 14, -5.606934877307e-01, 2.459299382228e-02, 1.5394e+00, 1.1305e-02,
2DIAGNOSTIC, 15, -5.626119636837e-01, 2.258676728770e-02, 1.5505e+00, 1.1144e-02,
2DIAGNOSTIC, 16, -5.657942376089e-01, 1.905889345018e-02, 1.5651e+00, 1.4556e-02,
2DIAGNOSTIC, 17, -5.681889627589e-01, 1.450110173534e-02, 1.5842e+00, 1.9077e-02,
2DIAGNOSTIC, 18, -5.684832694038e-01, 9.660618000729e-03, 1.5948e+00, 1.0601e-02,
2DIAGNOSTIC, 19, -5.687291827848e-01, 5.228819946801e-03, 1.6043e+00, 9.5601e-03,
2DIAGNOSTIC, 20, -5.691115514849e-01, 1.032802777172e-03, 1.6154e+00, 1.1036e-02,
2DIAGNOSTIC, 21, -5.694470902908e-01, 7.696967812635e-04, 1.6278e+00, 1.2435e-02,
2DIAGNOSTIC, 22, -5.694768807822e-01, 6.237904020166e-04, 1.6388e+00, 1.0974e-02,
2DIAGNOSTIC, 23, -5.695493296207e-01, 4.547486405073e-04, 1.6502e+00, 1.1394e-02,
2DIAGNOSTIC, 24, -5.698094448079e-01, 2.882805889104e-04, 1.6606e+00, 1.0469e-02,
2DIAGNOSTIC, 25, -5.705091050401e-01, 1.689373148494e-04, 1.6714e+00, 1.0797e-02,
2DIAGNOSTIC, 26, -5.708620154990e-01, 1.203160322753e-04, 1.6896e+00, 1.8148e-02,
2DIAGNOSTIC, 27, -5.708843857870e-01, 1.155714934568e-04, 1.6998e+00, 1.0182e-02,
2DIAGNOSTIC, 28, -5.710634620439e-01, 1.103682341740e-04, 1.7130e+00, 1.3271e-02,
2DIAGNOSTIC, 29, -5.712902604148e-01, 1.042407477933e-04, 1.7237e+00, 1.0670e-02,
2DIAGNOSTIC, 30, -5.716472620836e-01, 1.021958567865e-04, 1.7346e+00, 1.0928e-02,
2DIAGNOSTIC, 31, -5.719889615070e-01, 1.028049734657e-04, 1.7479e+00, 1.3250e-02,
2DIAGNOSTIC, 32, -5.722671319728e-01, 9.926840003671e-05, 1.7645e+00, 1.6607e-02,
2DIAGNOSTIC, 33, -5.727177255994e-01, 9.555019275344e-05, 1.7780e+00, 1.3535e-02,
2DIAGNOSTIC, 34, -5.729285952524e-01, 9.037173723472e-05, 1.7894e+00, 1.1368e-02,
2DIAGNOSTIC, 35, -5.729976175575e-01, 8.896862965122e-05, 1.7991e+00, 9.6660e-03,
2DIAGNOSTIC, 36, -5.730798054016e-01, 8.601728768950e-05, 1.8125e+00, 1.3461e-02,
2DIAGNOSTIC, 37, -5.731035967165e-01, 7.581942890644e-05, 1.8220e+00, 9.4500e-03,
2DIAGNOSTIC, 38, -5.731602178322e-01, 6.241720092801e-05, 1.8349e+00, 1.2900e-02,
2DIAGNOSTIC, 39, -5.732759085260e-01, 4.860205598798e-05, 1.8479e+00, 1.2989e-02,
2DIAGNOSTIC, 40, -5.732670187275e-01, 3.567922481192e-05, 1.8590e+00, 1.1114e-02,
2DIAGNOSTIC, 41, -5.732864823328e-01, 2.492385223974e-05, 1.8698e+00, 1.0855e-02,
2DIAGNOSTIC, 42, -5.732873001083e-01, 1.590675768423e-05, 1.8810e+00, 1.1141e-02,
2DIAGNOSTIC, 43, -5.733445943423e-01, 1.221033379021e-05, 1.8922e+00, 1.1198e-02,
2DIAGNOSTIC, 44, -5.734921144931e-01, 1.194180385459e-05, 1.9040e+00, 1.1860e-02,
2DIAGNOSTIC, 45, -5.736052023566e-01, 1.273473826871e-05, 1.9144e+00, 1.0383e-02,
2DIAGNOSTIC, 46, -5.738501646439e-01, 1.617221726735e-05, 1.9299e+00, 1.5474e-02,
2DIAGNOSTIC, 47, -5.739735418033e-01, 1.960865754213e-05, 1.9431e+00, 1.3216e-02,
2DIAGNOSTIC, 48, -5.738899716529e-01, 2.074827410502e-05, 1.9540e+00, 1.0876e-02,
2DIAGNOSTIC, 49, -5.738689189966e-01, 2.100862810882e-05, 1.9667e+00, 1.2724e-02,
2DIAGNOSTIC, 50, -5.738717058436e-01, 1.923409785363e-05, 1.9788e+00, 1.2100e-02,
2DIAGNOSTIC, 51, -5.738732731578e-01, 1.593935059713e-05, 1.9887e+00, 9.9249e-03,
2DIAGNOSTIC, 52, -5.738779860398e-01, 1.136333182995e-05, 2.0013e+00, 1.2580e-02,
2DIAGNOSTIC, 53, -5.738823842484e-01, 6.584194559445e-06, 2.0123e+00, 1.0953e-02,
2DIAGNOSTIC, 54, -5.738627497085e-01, 2.701963537941e-06, 2.0234e+00, 1.1094e-02,
DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -4.771906793464e-01, 1.797693134862e+308, 3.5217e+00, 1.4983e+00,
2DIAGNOSTIC, 2, -4.776726643556e-01, 1.797693134862e+308, 3.5935e+00, 7.1867e-02,
2DIAGNOSTIC, 3, -4.786859669927e-01, 1.797693134862e+308, 3.6701e+00, 7.6570e-02,
2DIAGNOSTIC, 4, -4.803822274616e-01, 1.797693134862e+308, 3.7399e+00, 6.9798e-02,
2DIAGNOSTIC, 5, -4.817122967896e-01, 1.797693134862e+308, 3.8134e+00, 7.3519e-02,
2DIAGNOSTIC, 6, -4.826176660953e-01, 1.797693134862e+308, 3.8831e+00, 6.9664e-02,
2DIAGNOSTIC, 7, -4.831829469992e-01, 1.797693134862e+308, 3.9730e+00, 8.9907e-02,
2DIAGNOSTIC, 8, -4.835422758377e-01, 1.797693134862e+308, 4.0646e+00, 9.1627e-02,
2DIAGNOSTIC, 9, -4.836287798346e-01, 1.797693134862e+308, 4.1363e+00, 7.1666e-02,
2DIAGNOSTIC, 10, -4.840205875096e-01, 1.001215183552e-03, 4.2097e+00, 7.3461e-02,
2DIAGNOSTIC, 11, -4.849831307285e-01, 8.182423557929e-04, 4.2805e+00, 7.0724e-02,
2DIAGNOSTIC, 12, -4.860816961951e-01, 6.693402904271e-04, 4.3718e+00, 9.1361e-02,
2DIAGNOSTIC, 13, -4.867302095974e-01, 5.568390189789e-04, 4.4462e+00, 7.4352e-02,
2DIAGNOSTIC, 14, -4.869635963613e-01, 4.908681823859e-04, 4.5907e+00, 1.4456e-01,
2DIAGNOSTIC, 15, -4.870422070528e-01, 4.442602229456e-04, 4.6717e+00, 8.0950e-02,
2DIAGNOSTIC, 16, -4.871757032964e-01, 4.004054478513e-04, 4.7421e+00, 7.0371e-02,
2DIAGNOSTIC, 17, -4.873370458640e-01, 3.492925406380e-04, 4.8126e+00, 7.0558e-02,
2DIAGNOSTIC, 18, -4.875199981185e-01, 2.895270938258e-04, 4.8830e+00, 7.0426e-02,
2DIAGNOSTIC, 19, -4.877037263642e-01, 2.181200611438e-04, 4.9535e+00, 7.0465e-02,
2DIAGNOSTIC, 20, -4.878059243070e-01, 1.480998962217e-04, 5.0239e+00, 7.0443e-02,
2DIAGNOSTIC, 21, -4.879335505952e-01, 1.010393649818e-04, 5.1136e+00, 8.9692e-02,
2DIAGNOSTIC, 22, -4.879980361919e-01, 7.953808524551e-05, 5.1938e+00, 8.0182e-02,
2DIAGNOSTIC, 23, -4.880215039824e-01, 6.958296624062e-05, 5.3244e+00, 1.3053e-01,
2DIAGNOSTIC, 24, -4.879985017054e-01, 5.921251658302e-05, 5.4041e+00, 7.9718e-02,
2DIAGNOSTIC, 25, -4.880214452996e-01, 4.662913044431e-05, 5.4828e+00, 7.8749e-02,
2DIAGNOSTIC, 26, -4.880095793633e-01, 3.343494906081e-05, 5.5626e+00, 7.9829e-02,
2DIAGNOSTIC, 27, -4.880333127035e-01, 2.214683565115e-05, 5.6424e+00, 7.9706e-02,
2DIAGNOSTIC, 28, -4.880263863258e-01, 1.331353195856e-05, 5.7124e+00, 7.0092e-02,
2DIAGNOSTIC, 29, -4.880664230663e-01, 8.465549463751e-06, 5.7923e+00, 7.9883e-02,
2DIAGNOSTIC, 30, -4.880811769570e-01, 5.458842913961e-06, 5.8640e+00, 7.1718e-02,
2DIAGNOSTIC, 31, -4.881092424489e-01, 5.134279358734e-06, 5.9515e+00, 8.7500e-02,
2DIAGNOSTIC, 32, -4.881143492012e-01, 5.698246704648e-06, 6.0309e+00, 7.9380e-02,
2DIAGNOSTIC, 33, -4.881119024983e-01, 6.173665377050e-06, 6.0996e+00, 6.8651e-02,
2DIAGNOSTIC, 34, -4.881256688541e-01, 5.958834222428e-06, 6.2000e+00, 1.0044e-01,
2DIAGNOSTIC, 35, -4.881292916898e-01, 5.718059159443e-06, 6.2838e+00, 8.3778e-02,
2DIAGNOSTIC, 36, -4.881211081302e-01, 4.697726067773e-06, 6.3564e+00, 7.2621e-02,
2DIAGNOSTIC, 37, -4.881212428418e-01, 3.767170208991e-06, 6.4552e+00, 9.8748e-02,
2DIAGNOSTIC, 38, -4.881329528525e-01, 2.673899060990e-06, 6.5411e+00, 8.5922e-02,
2DIAGNOSTIC, 39, -4.881764760940e-01, 2.704525986941e-06, 6.6313e+00, 9.0228e-02,
2DIAGNOSTIC, 40, -4.881866837937e-01, 2.889945017310e-06, 6.7053e+00, 7.3960e-02,
2DIAGNOSTIC, 41, -4.882050890175e-01, 3.537845204744e-06, 6.7786e+00, 7.3298e-02,
2DIAGNOSTIC, 42, -4.882732552858e-01, 4.919300735824e-06, 6.8521e+00, 7.3553e-02,
2DIAGNOSTIC, 43, -4.884235997215e-01, 7.816475830379e-06, 6.9763e+00, 1.2419e-01,
2DIAGNOSTIC, 44, -4.884868284758e-01, 1.087219640771e-05, 7.0505e+00, 7.4221e-02,
2DIAGNOSTIC, 45, -4.884998896612e-01, 1.305261233587e-05, 7.1230e+00, 7.2474e-02,
2DIAGNOSTIC, 46, -4.885593010279e-01, 1.464666393629e-05, 7.1963e+00, 7.3274e-02,
2DIAGNOSTIC, 47, -4.888520836921e-01, 1.845383990430e-05, 7.3196e+00, 1.2332e-01,
2DIAGNOSTIC, 48, -4.888431192910e-01, 2.029535592057e-05, 7.4026e+00, 8.3009e-02,
2DIAGNOSTIC, 49, -4.888491486178e-01, 2.082038335589e-05, 7.4856e+00, 8.2990e-02,
2DIAGNOSTIC, 50, -4.888491247427e-01, 1.958674706866e-05, 7.5582e+00, 7.2616e-02,
2DIAGNOSTIC, 51, -4.888441656490e-01, 1.672351562145e-05, 7.6311e+00, 7.2911e-02,
2DIAGNOSTIC, 52, -4.888637800326e-01, 1.332023075508e-05, 7.7143e+00, 8.3177e-02,
2DIAGNOSTIC, 53, -4.888748592607e-01, 1.058004923297e-05, 7.7956e+00, 8.1257e-02,
2DIAGNOSTIC, 54, -4.888720060888e-01, 7.689706201016e-06, 7.8786e+00, 8.3016e-02,
2DIAGNOSTIC, 55, -4.888746806816e-01, 4.413805789426e-06, 7.9615e+00, 8.2908e-02,
2DIAGNOSTIC, 56, -4.888811237046e-01, 1.486905308736e-06, 8.0440e+00, 8.2541e-02,
2DIAGNOSTIC, 57, -4.888836615982e-01, 1.597240277460e-06, 8.1154e+00, 7.1347e-02,
2DIAGNOSTIC, 58, -4.888949687421e-01, 1.623079018648e-06, 8.1867e+00, 7.1317e-02,
2DIAGNOSTIC, 59, -4.889528129382e-01, 2.177468018612e-06, 8.2597e+00, 7.2963e-02,
2DIAGNOSTIC, 60, -4.893019821670e-01, 5.942426737075e-06, 8.3618e+00, 1.0213e-01,
2DIAGNOSTIC, 61, -4.893930501591e-01, 9.793751744133e-06, 8.4446e+00, 8.2831e-02,
2DIAGNOSTIC, 62, -4.893976920280e-01, 1.287649572864e-05, 8.5273e+00, 8.2709e-02,
2DIAGNOSTIC, 63, -4.894075503241e-01, 1.492479627221e-05, 8.6106e+00, 8.3265e-02,
2DIAGNOSTIC, 64, -4.894525637560e-01, 1.589555939251e-05, 8.7460e+00, 1.3541e-01,
2DIAGNOSTIC, 65, -4.894428340120e-01, 1.522287512503e-05, 8.8288e+00, 8.2833e-02,
2DIAGNOSTIC, 66, -4.894540914954e-01, 1.330034306110e-05, 8.9020e+00, 7.3156e-02,
2DIAGNOSTIC, 67, -4.894657184349e-01, 1.037536779879e-05, 8.9739e+00, 7.1913e-02,
2DIAGNOSTIC, 68, -4.894913512114e-01, 6.928282067647e-06, 9.0570e+00, 8.3084e-02,
2DIAGNOSTIC, 69, -4.894901040301e-01, 3.352822323813e-06, 9.1412e+00, 8.4264e-02,
2DIAGNOSTIC, 70, -4.894871228695e-01, 2.469704626728e-06, 9.2248e+00, 8.3522e-02,
2DIAGNOSTIC, 71, -4.895048571074e-01, 2.319380114930e-06, 9.2965e+00, 7.1706e-02,
2DIAGNOSTIC, 72, -4.895113834215e-01, 2.076938444961e-06, 9.3680e+00, 7.1490e-02,
2DIAGNOSTIC, 73, -4.895292841559e-01, 1.891611955698e-06, 9.4396e+00, 7.1621e-02,
2DIAGNOSTIC, 74, -4.895715029290e-01, 2.261444499030e-06, 9.5311e+00, 9.1477e-02,
2DIAGNOSTIC, 75, -4.895846336328e-01, 2.466081043572e-06, 9.6580e+00, 1.2698e-01,
2DIAGNOSTIC, 76, -4.895856566180e-01, 2.563110441958e-06, 9.7398e+00, 8.1764e-02,
2DIAGNOSTIC, 77, -4.895790175203e-01, 2.486799438399e-06, 9.8190e+00, 7.9155e-02,
2DIAGNOSTIC, 78, -4.895709875442e-01, 2.345592767987e-06, 9.8884e+00, 6.9402e-02,
2DIAGNOSTIC, 79, -4.895659051218e-01, 1.972409777272e-06, 9.9668e+00, 7.8413e-02,
2DIAGNOSTIC, 80, -4.895597053226e-01, 1.386007599002e-06, 1.0060e+01, 9.3090e-02,
DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -4.454057963872e-01, 1.797693134862e+308, 1.2019e+01, 1.9595e+00,
2DIAGNOSTIC, 2, -4.456690392455e-01, 1.797693134862e+308, 1.2476e+01, 4.5642e-01,
2DIAGNOSTIC, 3, -4.460815207136e-01, 1.797693134862e+308, 1.2897e+01, 4.2158e-01,
2DIAGNOSTIC, 4, -4.465105436267e-01, 1.797693134862e+308, 1.3334e+01, 4.3695e-01,
2DIAGNOSTIC, 5, -4.468664732856e-01, 1.797693134862e+308, 1.3754e+01, 4.1966e-01,
2DIAGNOSTIC, 6, -4.472064827319e-01, 1.797693134862e+308, 1.4212e+01, 4.5762e-01,
2DIAGNOSTIC, 7, -4.474996372785e-01, 1.797693134862e+308, 1.4670e+01, 4.5845e-01,
2DIAGNOSTIC, 8, -4.475818162162e-01, 1.797693134862e+308, 1.5248e+01, 5.7805e-01,
2DIAGNOSTIC, 9, -4.476839614550e-01, 1.797693134862e+308, 1.5978e+01, 7.2968e-01,
2DIAGNOSTIC, 10, -4.477122857324e-01, 3.618009524106e-04, 1.6440e+01, 4.6183e-01,
2DIAGNOSTIC, 11, -4.477700775554e-01, 2.764638913175e-04, 1.6891e+01, 4.5103e-01,
2DIAGNOSTIC, 12, -4.478161459591e-01, 1.968649083463e-04, 1.7375e+01, 4.8491e-01,
2DIAGNOSTIC, 13, -4.478314388229e-01, 1.326505853236e-04, 1.7880e+01, 5.0403e-01,
2DIAGNOSTIC, 14, -4.478315550965e-01, 8.517610132389e-05, 1.8392e+01, 5.1227e-01,
2DIAGNOSTIC, 15, -4.478334156307e-01, 5.142150062953e-05, 1.8903e+01, 5.1110e-01,
2DIAGNOSTIC, 16, -4.478312205357e-01, 3.051997030414e-05, 1.9793e+01, 8.8963e-01,
2DIAGNOSTIC, 17, -4.478312128492e-01, 2.035195587822e-05, 2.0341e+01, 5.4858e-01,
2DIAGNOSTIC, 18, -4.478304134149e-01, 1.240793030266e-05, 2.0852e+01, 5.1117e-01,
2DIAGNOSTIC, 19, -4.478286748367e-01, 7.691752650280e-06, 2.1403e+01, 5.5087e-01,
2DIAGNOSTIC, 20, -4.478288599185e-01, 3.767889934517e-06, 2.1969e+01, 5.6631e-01,
2DIAGNOSTIC, 21, -4.478279655506e-01, 1.702207060708e-06, 2.2485e+01, 5.1546e-01,
2DIAGNOSTIC, 22, -4.478265614063e-01, 1.085494478276e-06, 2.2921e+01, 4.3566e-01,
DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -4.231231150175e-01, 1.797693134862e+308, 2.6647e+01, 3.7268e+00,
Elapsed time (stage 0): 2.7582e+01

Stage 1
iterations = 1000x500x250x0
convergence threshold = 1.0000e-06
convergence window size = 10
number of levels = 4
using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00)
preprocessing: winsorizing the image intensities
Shrink factors (level 1 out of 4): [8, 8, 8]
Shrink factors (level 2 out of 4): [4, 4, 4]
Shrink factors (level 3 out of 4): [2, 2, 2]
Shrink factors (level 4 out of 4): [1, 1, 1]
smoothing sigmas per level: [3, 2, 1, 0]
regular sampling (percentage = 2.5000e-01)

*** Running AffineTransform registration ***

DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -5.684675424467e-01, 1.797693134862e+308, 1.3778e+00, 1.3778e+00,
2DIAGNOSTIC, 2, -5.694734458927e-01, 1.797693134862e+308, 1.3875e+00, 9.6121e-03,
2DIAGNOSTIC, 3, -5.713299446975e-01, 1.797693134862e+308, 1.3975e+00, 1.0026e-02,
2DIAGNOSTIC, 4, -5.771211326799e-01, 1.797693134862e+308, 1.4098e+00, 1.2284e-02,
2DIAGNOSTIC, 5, -6.040168620445e-01, 1.797693134862e+308, 1.4212e+00, 1.1481e-02,
2DIAGNOSTIC, 6, -6.151879902098e-01, 1.797693134862e+308, 1.4310e+00, 9.7849e-03,
2DIAGNOSTIC, 7, -6.535237567568e-01, 1.797693134862e+308, 1.4447e+00, 1.3667e-02,
2DIAGNOSTIC, 8, -6.727890291266e-01, 1.797693134862e+308, 1.4586e+00, 1.3936e-02,
2DIAGNOSTIC, 9, -6.810865230913e-01, 1.797693134862e+308, 1.4683e+00, 9.6309e-03,
2DIAGNOSTIC, 10, -7.047579705042e-01, 1.566067543077e-02, 1.4930e+00, 2.4757e-02,
2DIAGNOSTIC, 11, -7.049986036609e-01, 1.492728021524e-02, 1.5043e+00, 1.1240e-02,
2DIAGNOSTIC, 12, -7.064593930499e-01, 1.309798271402e-02, 1.5159e+00, 1.1613e-02,
2DIAGNOSTIC, 13, -7.086145563372e-01, 1.054684569494e-02, 1.5261e+00, 1.0245e-02,
2DIAGNOSTIC, 14, -7.116286580496e-01, 7.707752956577e-03, 1.5387e+00, 1.2607e-02,
2DIAGNOSTIC, 15, -7.147621561686e-01, 5.456140279153e-03, 1.5494e+00, 1.0721e-02,
2DIAGNOSTIC, 16, -7.180907014886e-01, 3.383774068007e-03, 1.5597e+00, 1.0221e-02,
2DIAGNOSTIC, 17, -7.229360271565e-01, 2.359519230711e-03, 1.5721e+00, 1.2407e-02,
2DIAGNOSTIC, 18, -7.289773488723e-01, 1.843660736882e-03, 1.5829e+00, 1.0824e-02,
2DIAGNOSTIC, 19, -7.377621849181e-01, 1.582127108522e-03, 1.5947e+00, 1.1797e-02,
2DIAGNOSTIC, 20, -7.531636477751e-01, 2.026318631799e-03, 1.6151e+00, 2.0426e-02,
2DIAGNOSTIC, 21, -7.638292707702e-01, 2.446781129398e-03, 1.6278e+00, 1.2643e-02,
2DIAGNOSTIC, 22, -7.674914805467e-01, 2.692761342688e-03, 1.6423e+00, 1.4511e-02,
2DIAGNOSTIC, 23, -7.697786552913e-01, 2.746534941228e-03, 1.6541e+00, 1.1796e-02,
2DIAGNOSTIC, 24, -7.747642537867e-01, 2.675521641424e-03, 1.6674e+00, 1.3346e-02,
2DIAGNOSTIC, 25, -7.868721104893e-01, 2.604577778708e-03, 1.6797e+00, 1.2298e-02,
2DIAGNOSTIC, 26, -8.038450899788e-01, 2.606377596186e-03, 1.6966e+00, 1.6920e-02,
2DIAGNOSTIC, 27, -8.148710864226e-01, 2.598474361024e-03, 1.7084e+00, 1.1801e-02,
2DIAGNOSTIC, 28, -8.285935725716e-01, 2.632436049687e-03, 1.7204e+00, 1.1925e-02,
2DIAGNOSTIC, 29, -8.352625026135e-01, 2.624219099759e-03, 1.7382e+00, 1.7874e-02,
2DIAGNOSTIC, 30, -8.369157676594e-01, 2.591590037505e-03, 1.7485e+00, 1.0311e-02,
2DIAGNOSTIC, 31, -8.434149660798e-01, 2.534699652333e-03, 1.7614e+00, 1.2828e-02,
2DIAGNOSTIC, 32, -8.470397207533e-01, 2.330458021031e-03, 1.7719e+00, 1.0477e-02,
2DIAGNOSTIC, 33, -8.482387366454e-01, 1.961968403023e-03, 1.7827e+00, 1.0876e-02,
2DIAGNOSTIC, 34, -8.492851932807e-01, 1.502329154688e-03, 1.7965e+00, 1.3811e-02,
2DIAGNOSTIC, 35, -8.508373993503e-01, 1.080660289452e-03, 1.8104e+00, 1.3875e-02,
2DIAGNOSTIC, 36, -8.514833262784e-01, 7.708536655278e-04, 1.8248e+00, 1.4357e-02,
2DIAGNOSTIC, 37, -8.529706347173e-01, 5.336580740615e-04, 1.8347e+00, 9.9230e-03,
2DIAGNOSTIC, 38, -8.561211294813e-01, 4.291293487590e-04, 1.8453e+00, 1.0564e-02,
2DIAGNOSTIC, 39, -8.585977680156e-01, 3.795180975052e-04, 1.8599e+00, 1.4681e-02,
2DIAGNOSTIC, 40, -8.596905114957e-01, 3.212933744873e-04, 1.8740e+00, 1.4078e-02,
2DIAGNOSTIC, 41, -8.598111544641e-01, 2.965579881143e-04, 1.8857e+00, 1.1634e-02,
2DIAGNOSTIC, 42, -8.605147484850e-01, 2.840270453861e-04, 1.8965e+00, 1.0801e-02,
2DIAGNOSTIC, 43, -8.609697113859e-01, 2.590435057342e-04, 1.9069e+00, 1.0419e-02,
2DIAGNOSTIC, 44, -8.612298533033e-01, 2.212523538909e-04, 1.9181e+00, 1.1249e-02,
2DIAGNOSTIC, 45, -8.615195709494e-01, 1.799027942179e-04, 1.9287e+00, 1.0578e-02,
2DIAGNOSTIC, 46, -8.617356336392e-01, 1.307119011084e-04, 1.9420e+00, 1.3318e-02,
2DIAGNOSTIC, 47, -8.621660814395e-01, 8.619746681710e-05, 1.9622e+00, 2.0170e-02,
2DIAGNOSTIC, 48, -8.621379707694e-01, 5.915433552222e-05, 1.9744e+00, 1.2215e-02,
2DIAGNOSTIC, 49, -8.621677654883e-01, 4.655153800208e-05, 1.9847e+00, 1.0259e-02,
2DIAGNOSTIC, 50, -8.622094752726e-01, 3.858212294934e-05, 1.9942e+00, 9.5770e-03,
2DIAGNOSTIC, 51, -8.622561860186e-01, 2.841479567243e-05, 2.0068e+00, 1.2518e-02,
2DIAGNOSTIC, 52, -8.622524848799e-01, 2.087471488343e-05, 2.0168e+00, 9.9978e-03,
2DIAGNOSTIC, 53, -8.622861809196e-01, 1.509149261687e-05, 2.0276e+00, 1.0799e-02,
2DIAGNOSTIC, 54, -8.623055830258e-01, 1.005948458341e-05, 2.0406e+00, 1.3003e-02,
2DIAGNOSTIC, 55, -8.622835956741e-01, 6.086502641299e-06, 2.0505e+00, 9.9669e-03,
2DIAGNOSTIC, 56, -8.623319044831e-01, 3.390697333242e-06, 2.0615e+00, 1.0954e-02,
2DIAGNOSTIC, 57, -8.623713666441e-01, 3.531995254040e-06, 2.0755e+00, 1.4004e-02,
2DIAGNOSTIC, 58, -8.625579606271e-01, 4.372266581541e-06, 2.0916e+00, 1.6147e-02,
2DIAGNOSTIC, 59, -8.625710104965e-01, 5.050933879432e-06, 2.1040e+00, 1.2360e-02,
2DIAGNOSTIC, 60, -8.625820069215e-01, 5.605100971060e-06, 2.1155e+00, 1.1545e-02,
2DIAGNOSTIC, 61, -8.626030172259e-01, 6.074343164457e-06, 2.1262e+00, 1.0621e-02,
2DIAGNOSTIC, 62, -8.625428302796e-01, 5.610015568244e-06, 2.1393e+00, 1.3178e-02,
2DIAGNOSTIC, 63, -8.625307704039e-01, 4.793112318546e-06, 2.1492e+00, 9.8391e-03,
2DIAGNOSTIC, 64, -8.625104326558e-01, 3.595787081343e-06, 2.1616e+00, 1.2443e-02,
2DIAGNOSTIC, 65, -8.625180323161e-01, 2.072495179233e-06, 2.1753e+00, 1.3725e-02,
DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -7.628663819722e-01, 1.797693134862e+308, 3.6653e+00, 1.4900e+00,
2DIAGNOSTIC, 2, -7.635469582898e-01, 1.797693134862e+308, 3.7541e+00, 8.8778e-02,
2DIAGNOSTIC, 3, -7.646107024945e-01, 1.797693134862e+308, 3.8437e+00, 8.9599e-02,
2DIAGNOSTIC, 4, -7.660988433448e-01, 1.797693134862e+308, 3.9333e+00, 8.9647e-02,
2DIAGNOSTIC, 5, -7.678761379957e-01, 1.797693134862e+308, 4.0234e+00, 9.0104e-02,
2DIAGNOSTIC, 6, -7.689045596153e-01, 1.797693134862e+308, 4.1337e+00, 1.1029e-01,
2DIAGNOSTIC, 7, -7.690111405147e-01, 1.797693134862e+308, 4.2052e+00, 7.1467e-02,
2DIAGNOSTIC, 8, -7.693443203434e-01, 1.797693134862e+308, 4.2794e+00, 7.4245e-02,
2DIAGNOSTIC, 9, -7.697026316566e-01, 1.797693134862e+308, 4.3518e+00, 7.2328e-02,
2DIAGNOSTIC, 10, -7.700618581260e-01, 6.487351590635e-04, 4.4283e+00, 7.6487e-02,
2DIAGNOSTIC, 11, -7.704446525917e-01, 5.042631360434e-04, 4.5006e+00, 7.2357e-02,
2DIAGNOSTIC, 12, -7.716713835304e-01, 3.980681316403e-04, 4.5911e+00, 9.0514e-02,
2DIAGNOSTIC, 13, -7.725473048766e-01, 3.267361552926e-04, 4.7393e+00, 1.4818e-01,
2DIAGNOSTIC, 14, -7.725834614741e-01, 2.751621330017e-04, 4.8131e+00, 7.3813e-02,
2DIAGNOSTIC, 15, -7.726075326686e-01, 2.499382877396e-04, 4.8890e+00, 7.5891e-02,
2DIAGNOSTIC, 16, -7.726502825482e-01, 2.300999599729e-04, 4.9644e+00, 7.5357e-02,
2DIAGNOSTIC, 17, -7.726921843590e-01, 1.942920794797e-04, 5.0405e+00, 7.6158e-02,
2DIAGNOSTIC, 18, -7.727471700789e-01, 1.522731768624e-04, 5.1159e+00, 7.5347e-02,
2DIAGNOSTIC, 19, -7.728109941479e-01, 1.091499187817e-04, 5.1918e+00, 7.5917e-02,
2DIAGNOSTIC, 20, -7.728696081453e-01, 6.839709946426e-05, 5.2774e+00, 8.5582e-02,
2DIAGNOSTIC, 21, -7.729410368862e-01, 3.286304690087e-05, 5.4417e+00, 1.6432e-01,
2DIAGNOSTIC, 22, -7.729559650152e-01, 1.804496542573e-05, 5.5132e+00, 7.1550e-02,
2DIAGNOSTIC, 23, -7.729577566631e-01, 1.704993673248e-05, 5.5865e+00, 7.3288e-02,
2DIAGNOSTIC, 24, -7.729603485448e-01, 1.527043813770e-05, 5.6622e+00, 7.5651e-02,
2DIAGNOSTIC, 25, -7.729713337760e-01, 1.282550027471e-05, 5.7479e+00, 8.5761e-02,
2DIAGNOSTIC, 26, -7.729818704725e-01, 1.022163079227e-05, 5.8230e+00, 7.5023e-02,
2DIAGNOSTIC, 27, -7.729797440168e-01, 7.500565123324e-06, 5.9086e+00, 8.5615e-02,
2DIAGNOSTIC, 28, -7.729847251474e-01, 5.172399552021e-06, 5.9840e+00, 7.5460e-02,
2DIAGNOSTIC, 29, -7.729778616421e-01, 3.340225989537e-06, 6.0733e+00, 8.9263e-02,
2DIAGNOSTIC, 30, -7.729817624448e-01, 2.164272946081e-06, 6.1509e+00, 7.7551e-02,
2DIAGNOSTIC, 31, -7.729953168147e-01, 1.962647106425e-06, 6.2233e+00, 7.2418e-02,
2DIAGNOSTIC, 32, -7.730100303934e-01, 2.023001489465e-06, 6.3130e+00, 8.9768e-02,
2DIAGNOSTIC, 33, -7.730011003486e-01, 1.902459486017e-06, 6.4422e+00, 1.2920e-01,
2DIAGNOSTIC, 34, -7.730087604988e-01, 1.816859001854e-06, 6.5148e+00, 7.2554e-02,
2DIAGNOSTIC, 35, -7.729989376770e-01, 1.660424424343e-06, 6.5902e+00, 7.5350e-02,
2DIAGNOSTIC, 36, -7.729995397042e-01, 1.554831173988e-06, 6.6654e+00, 7.5298e-02,
2DIAGNOSTIC, 37, -7.730005485073e-01, 1.375782038078e-06, 6.7407e+00, 7.5249e-02,
2DIAGNOSTIC, 38, -7.730019395347e-01, 1.222396590936e-06, 6.8274e+00, 8.6659e-02,
DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -7.116036937662e-01, 1.797693134862e+308, 8.8260e+00, 1.9986e+00,
2DIAGNOSTIC, 2, -7.119979355228e-01, 1.797693134862e+308, 9.2898e+00, 4.6382e-01,
2DIAGNOSTIC, 3, -7.122958001418e-01, 1.797693134862e+308, 9.7106e+00, 4.2075e-01,
2DIAGNOSTIC, 4, -7.125094135632e-01, 1.797693134862e+308, 1.0130e+01, 4.1962e-01,
2DIAGNOSTIC, 5, -7.126440437950e-01, 1.797693134862e+308, 1.0611e+01, 4.8062e-01,
2DIAGNOSTIC, 6, -7.128405457199e-01, 1.797693134862e+308, 1.1141e+01, 5.2997e-01,
2DIAGNOSTIC, 7, -7.128963362639e-01, 1.797693134862e+308, 1.1561e+01, 4.2056e-01,
2DIAGNOSTIC, 8, -7.129817299207e-01, 1.797693134862e+308, 1.2050e+01, 4.8847e-01,
2DIAGNOSTIC, 9, -7.130201644278e-01, 1.797693134862e+308, 1.2577e+01, 5.2738e-01,
2DIAGNOSTIC, 10, -7.130582775064e-01, 1.245221579417e-04, 1.2992e+01, 4.1438e-01,
2DIAGNOSTIC, 11, -7.130916281950e-01, 8.574705724997e-05, 1.3465e+01, 4.7316e-01,
2DIAGNOSTIC, 12, -7.131474021360e-01, 6.077719829807e-05, 1.4049e+01, 5.8462e-01,
2DIAGNOSTIC, 13, -7.131757137764e-01, 4.429618273565e-05, 1.4466e+01, 4.1653e-01,
2DIAGNOSTIC, 14, -7.131794898111e-01, 3.252527955962e-05, 1.4881e+01, 4.1526e-01,
2DIAGNOSTIC, 15, -7.131900835041e-01, 2.333458774402e-05, 1.5298e+01, 4.1721e-01,
2DIAGNOSTIC, 16, -7.132533740279e-01, 1.980575383259e-05, 1.5772e+01, 4.7387e-01,
2DIAGNOSTIC, 17, -7.132855653389e-01, 1.701805371968e-05, 1.6469e+01, 6.9718e-01,
2DIAGNOSTIC, 18, -7.132838242906e-01, 1.497661003565e-05, 1.6999e+01, 5.2996e-01,
2DIAGNOSTIC, 19, -7.132834739387e-01, 1.275636442060e-05, 1.7417e+01, 4.1743e-01,
2DIAGNOSTIC, 20, -7.132851645042e-01, 1.052717909675e-05, 1.7842e+01, 4.2510e-01,
2DIAGNOSTIC, 21, -7.132862324872e-01, 8.283806504243e-06, 1.8315e+01, 4.7285e-01,
2DIAGNOSTIC, 22, -7.132894796826e-01, 6.656948338978e-06, 1.8732e+01, 4.1740e-01,
2DIAGNOSTIC, 23, -7.132884972311e-01, 5.173570918789e-06, 1.9148e+01, 4.1543e-01,
2DIAGNOSTIC, 24, -7.132940020885e-01, 3.630613858545e-06, 1.9565e+01, 4.1768e-01,
2DIAGNOSTIC, 25, -7.132979058627e-01, 2.200343127014e-06, 2.0037e+01, 4.7160e-01,
2DIAGNOSTIC, 26, -7.133011789209e-01, 1.797364406336e-06, 2.0455e+01, 4.1781e-01,
2DIAGNOSTIC, 27, -7.133004888983e-01, 1.836212025326e-06, 2.0927e+01, 4.7229e-01,
2DIAGNOSTIC, 28, -7.132995763755e-01, 1.774681208544e-06, 2.2355e+01, 1.4277e+00,
2DIAGNOSTIC, 29, -7.132995763743e-01, 1.652100733822e-06, 2.3614e+01, 1.2596e+00,
2DIAGNOSTIC, 30, -7.132995763743e-01, 1.505991738947e-06, 2.4139e+01, 5.2526e-01,
2DIAGNOSTIC, 31, -7.132995763743e-01, 1.339644693607e-06, 2.4645e+01, 5.0572e-01,
2DIAGNOSTIC, 32, -7.132995763743e-01, 1.196476693464e-06, 2.5120e+01, 4.7471e-01,
2DIAGNOSTIC, 33, -7.132995763743e-01, 1.030479742987e-06, 2.5594e+01, 4.7429e-01,
DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
2DIAGNOSTIC, 1, -6.551279340618e-01, 1.797693134862e+308, 2.9770e+01, 4.1763e+00,
Elapsed time (stage 1): 3.0681e+01

Stage 2
iterations = 100x70x50x0
convergence threshold = 1.0000e-06
convergence window size = 10
number of levels = 4
using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00)
preprocessing: winsorizing the image intensities
Shrink factors (level 1 out of 4): [8, 8, 8]
Shrink factors (level 2 out of 4): [4, 4, 4]
Shrink factors (level 3 out of 4): [2, 2, 2]
Shrink factors (level 4 out of 4): [1, 1, 1]
smoothing sigmas per level: [3, 2, 1, 0]
Using default NONE metricSamplingStrategy

*** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) ***

XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
1DIAGNOSTIC, 1, -8.320805145718e-01, 1.797693134862e+308, 1.3917e+00, 1.3917e+00,
1DIAGNOSTIC, 2, -8.540973126470e-01, 1.797693134862e+308, 1.4805e+00, 8.8880e-02,
1DIAGNOSTIC, 3, -8.707513147268e-01, 1.797693134862e+308, 1.5682e+00, 8.7649e-02,
1DIAGNOSTIC, 4, -8.840331081147e-01, 1.797693134862e+308, 1.6538e+00, 8.5573e-02,
1DIAGNOSTIC, 5, -8.927654364803e-01, 1.797693134862e+308, 1.7405e+00, 8.6730e-02,
1DIAGNOSTIC, 6, -8.988395909538e-01, 1.797693134862e+308, 1.8298e+00, 8.9336e-02,
1DIAGNOSTIC, 7, -9.038057641391e-01, 1.797693134862e+308, 1.9188e+00, 8.8917e-02,
1DIAGNOSTIC, 8, -9.066365828276e-01, 1.797693134862e+308, 2.0078e+00, 8.9013e-02,
1DIAGNOSTIC, 9, -9.099593618872e-01, 1.797693134862e+308, 2.0965e+00, 8.8739e-02,
1DIAGNOSTIC, 10, -9.124255359652e-01, 5.279234986924e-03, 2.1869e+00, 9.0441e-02,
1DIAGNOSTIC, 11, -9.147270968975e-01, 3.563806649889e-03, 2.2773e+00, 9.0339e-02,
1DIAGNOSTIC, 12, -9.162608088813e-01, 2.441507375593e-03, 2.3677e+00, 9.0421e-02,
1DIAGNOSTIC, 13, -9.182216948491e-01, 1.726210135117e-03, 2.4772e+00, 1.0951e-01,
1DIAGNOSTIC, 14, -9.205156555400e-01, 1.308542138800e-03, 2.5962e+00, 1.1901e-01,
1DIAGNOSTIC, 15, -9.216788623311e-01, 1.034793271734e-03, 2.6973e+00, 1.0108e-01,
1DIAGNOSTIC, 16, -9.228380795495e-01, 8.429033475001e-04, 2.7924e+00, 9.5126e-02,
1DIAGNOSTIC, 17, -9.236005644258e-01, 7.027743426267e-04, 2.8833e+00, 9.0831e-02,
1DIAGNOSTIC, 18, -9.251398240848e-01, 5.893010865371e-04, 2.9752e+00, 9.1923e-02,
1DIAGNOSTIC, 19, -9.258759410988e-01, 4.995324679827e-04, 3.0678e+00, 9.2663e-02,
1DIAGNOSTIC, 20, -9.272597496936e-01, 4.326421508355e-04, 3.1581e+00, 9.0262e-02,
1DIAGNOSTIC, 21, -9.284602232561e-01, 3.842810702510e-04, 3.2486e+00, 9.0464e-02,
1DIAGNOSTIC, 22, -9.293442896650e-01, 3.386331445273e-04, 3.3427e+00, 9.4090e-02,
1DIAGNOSTIC, 23, -9.303644500592e-01, 3.054062019850e-04, 3.4329e+00, 9.0280e-02,
1DIAGNOSTIC, 24, -9.314229335977e-01, 2.898588583429e-04, 3.5237e+00, 9.0756e-02,
1DIAGNOSTIC, 25, -9.321794782757e-01, 2.720995408114e-04, 3.6168e+00, 9.3100e-02,
1DIAGNOSTIC, 26, -9.327742991242e-01, 2.512049411382e-04, 3.7417e+00, 1.2485e-01,
1DIAGNOSTIC, 27, -9.333851208215e-01, 2.239265160756e-04, 3.8543e+00, 1.1264e-01,
1DIAGNOSTIC, 28, -9.340140241160e-01, 2.017007248460e-04, 3.9588e+00, 1.0454e-01,
1DIAGNOSTIC, 29, -9.347384125014e-01, 1.774086150439e-04, 4.0493e+00, 9.0520e-02,
1DIAGNOSTIC, 30, -9.354557926596e-01, 1.596026948366e-04, 4.1413e+00, 9.1944e-02,
1DIAGNOSTIC, 31, -9.363237274702e-01, 1.485922110241e-04, 4.2326e+00, 9.1308e-02,
1DIAGNOSTIC, 32, -9.365776901765e-01, 1.351347411859e-04, 4.3234e+00, 9.0834e-02,
1DIAGNOSTIC, 33, -9.371458289830e-01, 1.246223035399e-04, 4.4130e+00, 8.9540e-02,
1DIAGNOSTIC, 34, -9.378724334839e-01, 1.191056317648e-04, 4.5083e+00, 9.5354e-02,
1DIAGNOSTIC, 35, -9.385970494108e-01, 1.155659338688e-04, 4.6019e+00, 9.3579e-02,
1DIAGNOSTIC, 36, -9.390974769087e-01, 1.105910343602e-04, 4.6921e+00, 9.0197e-02,
1DIAGNOSTIC, 37, -9.395646728661e-01, 1.044682096679e-04, 4.7825e+00, 9.0434e-02,
1DIAGNOSTIC, 38, -9.398529769444e-01, 9.622669187852e-05, 4.8723e+00, 8.9778e-02,
1DIAGNOSTIC, 39, -9.401000999745e-01, 8.689560887290e-05, 4.9619e+00, 8.9611e-02,
1DIAGNOSTIC, 40, -9.406454033175e-01, 7.939573753743e-05, 5.0677e+00, 1.0577e-01,
1DIAGNOSTIC, 41, -9.408827260900e-01, 7.302894140324e-05, 5.1576e+00, 8.9950e-02,
1DIAGNOSTIC, 42, -9.417124662231e-01, 6.802071739887e-05, 5.2464e+00, 8.8764e-02,
1DIAGNOSTIC, 43, -9.422724096319e-01, 6.475322446127e-05, 5.3366e+00, 9.0166e-02,
1DIAGNOSTIC, 44, -9.428967494236e-01, 6.487278215571e-05, 5.4340e+00, 9.7419e-02,
1DIAGNOSTIC, 45, -9.431500372073e-01, 6.546636622703e-05, 5.5256e+00, 9.1574e-02,
1DIAGNOSTIC, 46, -9.432829682712e-01, 6.404426583830e-05, 5.6167e+00, 9.1165e-02,
1DIAGNOSTIC, 47, -9.437286850359e-01, 6.257671597111e-05, 5.7093e+00, 9.2572e-02,
1DIAGNOSTIC, 48, -9.441220949323e-01, 5.949802360179e-05, 5.8003e+00, 9.1033e-02,
1DIAGNOSTIC, 49, -9.440792399044e-01, 5.209257248607e-05, 5.8910e+00, 9.0699e-02,
1DIAGNOSTIC, 50, -9.446184196395e-01, 4.684314952914e-05, 5.9823e+00, 9.1305e-02,
1DIAGNOSTIC, 51, -9.448208357223e-01, 3.989758406092e-05, 6.0722e+00, 8.9887e-02,
1DIAGNOSTIC, 52, -9.449425303006e-01, 3.499841199643e-05, 6.1619e+00, 8.9718e-02,
1DIAGNOSTIC, 53, -9.451887213802e-01, 3.158495258319e-05, 6.2623e+00, 1.0031e-01,
1DIAGNOSTIC, 54, -9.455251438498e-01, 3.076947340690e-05, 6.3553e+00, 9.3001e-02,
1DIAGNOSTIC, 55, -9.459142459380e-01, 3.063583155860e-05, 6.4474e+00, 9.2152e-02,
1DIAGNOSTIC, 56, -9.460607778525e-01, 2.905526045675e-05, 6.5371e+00, 8.9710e-02,
1DIAGNOSTIC, 57, -9.462779506049e-01, 2.835709953651e-05, 6.6268e+00, 8.9638e-02,
1DIAGNOSTIC, 58, -9.464304888514e-01, 2.793531257534e-05, 6.7159e+00, 8.9141e-02,
1DIAGNOSTIC, 59, -9.467882952803e-01, 2.643601218027e-05, 6.8061e+00, 9.0238e-02,
1DIAGNOSTIC, 60, -9.470691594277e-01, 2.661520208028e-05, 6.8970e+00, 9.0890e-02,
1DIAGNOSTIC, 61, -9.471082430272e-01, 2.548752853027e-05, 6.9884e+00, 9.1348e-02,
1DIAGNOSTIC, 62, -9.472123176752e-01, 2.314335177634e-05, 7.1001e+00, 1.1173e-01,
1DIAGNOSTIC, 63, -9.473569132485e-01, 2.057068060619e-05, 7.1908e+00, 9.0748e-02,
1DIAGNOSTIC, 64, -9.477068816321e-01, 1.935435415486e-05, 7.2834e+00, 9.2523e-02,
1DIAGNOSTIC, 65, -9.476982384961e-01, 1.809533003139e-05, 7.3790e+00, 9.5670e-02,
1DIAGNOSTIC, 66, -9.483419696629e-01, 1.886891842291e-05, 7.5032e+00, 1.2417e-01,
1DIAGNOSTIC, 67, -9.483808115042e-01, 1.896742161337e-05, 7.6266e+00, 1.2338e-01,
1DIAGNOSTIC, 68, -9.482678494959e-01, 1.744251569308e-05, 7.7176e+00, 9.1000e-02,
1DIAGNOSTIC, 69, -9.487703675108e-01, 1.814383609645e-05, 7.8077e+00, 9.0117e-02,
1DIAGNOSTIC, 70, -9.487238975137e-01, 1.807286177614e-05, 7.8980e+00, 9.0320e-02,
1DIAGNOSTIC, 71, -9.490684076081e-01, 1.795099816727e-05, 7.9868e+00, 8.8749e-02,
1DIAGNOSTIC, 72, -9.491312726659e-01, 1.683216713389e-05, 8.0765e+00, 8.9712e-02,
1DIAGNOSTIC, 73, -9.490622177691e-01, 1.448784299760e-05, 8.1663e+00, 8.9822e-02,
1DIAGNOSTIC, 74, -9.496404411941e-01, 1.471630184254e-05, 8.2560e+00, 8.9656e-02,
1DIAGNOSTIC, 75, -9.493546952220e-01, 1.220723422666e-05, 8.3453e+00, 8.9357e-02,
1DIAGNOSTIC, 76, -9.497774435059e-01, 1.296232933624e-05, 8.4358e+00, 9.0450e-02,
1DIAGNOSTIC, 77, -9.498886496402e-01, 1.308266486712e-05, 8.5256e+00, 8.9788e-02,
1DIAGNOSTIC, 78, -9.499096817441e-01, 1.156622091710e-05, 8.6360e+00, 1.1047e-01,
1DIAGNOSTIC, 79, -9.504749144941e-01, 1.315140900912e-05, 8.7268e+00, 9.0788e-02,
1DIAGNOSTIC, 80, -9.506323065413e-01, 1.379933660540e-05, 8.8177e+00, 9.0915e-02,
1DIAGNOSTIC, 81, -9.506087527890e-01, 1.435494770583e-05, 8.9093e+00, 9.1543e-02,
1DIAGNOSTIC, 82, -9.510760323580e-01, 1.556315144684e-05, 8.9986e+00, 8.9338e-02,
1DIAGNOSTIC, 83, -9.508217361514e-01, 1.399121408178e-05, 9.0906e+00, 9.1995e-02,
1DIAGNOSTIC, 84, -9.507524767457e-01, 1.304990862568e-05, 9.1811e+00, 9.0464e-02,
1DIAGNOSTIC, 85, -9.510971200396e-01, 1.108712431789e-05, 9.2708e+00, 8.9753e-02,
1DIAGNOSTIC, 86, -9.512421432638e-01, 1.010678529039e-05, 9.3607e+00, 8.9905e-02,
1DIAGNOSTIC, 87, -9.513009627919e-01, 8.805887961965e-06, 9.4649e+00, 1.0422e-01,
1DIAGNOSTIC, 88, -9.514149923061e-01, 7.164755637079e-06, 9.5547e+00, 8.9705e-02,
1DIAGNOSTIC, 89, -9.516633976884e-01, 7.694535302314e-06, 9.6457e+00, 9.1006e-02,
1DIAGNOSTIC, 90, -9.517382978857e-01, 8.258344339604e-06, 9.7366e+00, 9.0967e-02,
1DIAGNOSTIC, 91, -9.516690714668e-01, 7.672846813862e-06, 9.8272e+00, 9.0550e-02,
1DIAGNOSTIC, 92, -9.517304389849e-01, 8.194361509553e-06, 9.9182e+00, 9.0996e-02,
1DIAGNOSTIC, 93, -9.516130814360e-01, 6.745214297719e-06, 1.0008e+01, 8.9814e-02,
1DIAGNOSTIC, 94, -9.522240682610e-01, 6.428983267208e-06, 1.0098e+01, 9.0218e-02,
1DIAGNOSTIC, 95, -9.517607103411e-01, 5.082958338041e-06, 1.0215e+01, 1.1641e-01,
1DIAGNOSTIC, 96, -9.521569097758e-01, 5.090846604281e-06, 1.0319e+01, 1.0437e-01,
1DIAGNOSTIC, 97, -9.520802886702e-01, 4.562920767131e-06, 1.0446e+01, 1.2727e-01,
1DIAGNOSTIC, 98, -9.520108257756e-01, 3.748242081582e-06, 1.0542e+01, 9.5307e-02,
1DIAGNOSTIC, 99, -9.521538487327e-01, 3.811078347203e-06, 1.0638e+01, 9.6245e-02,
1DIAGNOSTIC, 100, -9.523552019035e-01, 4.369208424155e-06, 1.0733e+01, 9.5264e-02,
XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
1DIAGNOSTIC, 1, -8.766166549361e-01, 1.797693134862e+308, 1.2761e+01, 2.0278e+00,
1DIAGNOSTIC, 2, -8.834907417247e-01, 1.797693134862e+308, 1.3306e+01, 5.4502e-01,
1DIAGNOSTIC, 3, -8.909120354467e-01, 1.797693134862e+308, 1.3835e+01, 5.2883e-01,
1DIAGNOSTIC, 4, -8.972588183516e-01, 1.797693134862e+308, 1.4358e+01, 5.2308e-01,
1DIAGNOSTIC, 5, -9.025054939041e-01, 1.797693134862e+308, 1.4875e+01, 5.1709e-01,
1DIAGNOSTIC, 6, -9.071265130078e-01, 1.797693134862e+308, 1.5398e+01, 5.2296e-01,
1DIAGNOSTIC, 7, -9.113929295444e-01, 1.797693134862e+308, 1.5923e+01, 5.2550e-01,
1DIAGNOSTIC, 8, -9.147276283405e-01, 1.797693134862e+308, 1.6433e+01, 5.0921e-01,
1DIAGNOSTIC, 9, -9.177212719801e-01, 1.797693134862e+308, 1.6945e+01, 5.1210e-01,
1DIAGNOSTIC, 10, -9.208013722882e-01, 3.095591157444e-03, 1.7483e+01, 5.3847e-01,
1DIAGNOSTIC, 11, -9.237856651688e-01, 2.494128221927e-03, 1.8034e+01, 5.5060e-01,
1DIAGNOSTIC, 12, -9.262384785840e-01, 2.011355749404e-03, 1.8557e+01, 5.2337e-01,
1DIAGNOSTIC, 13, -9.281964855796e-01, 1.646309384872e-03, 1.9093e+01, 5.3558e-01,
1DIAGNOSTIC, 14, -9.300345270259e-01, 1.366253739482e-03, 1.9645e+01, 5.5186e-01,
1DIAGNOSTIC, 15, -9.317640535890e-01, 1.143116330295e-03, 2.0197e+01, 5.5249e-01,
1DIAGNOSTIC, 16, -9.330398139456e-01, 9.567978988762e-04, 2.0734e+01, 5.3708e-01,
1DIAGNOSTIC, 17, -9.342937941727e-01, 8.050540776625e-04, 2.1273e+01, 5.3919e-01,
1DIAGNOSTIC, 18, -9.356827655535e-01, 6.771973534136e-04, 2.1813e+01, 5.4008e-01,
1DIAGNOSTIC, 19, -9.370931534006e-01, 5.714647539372e-04, 2.2362e+01, 5.4873e-01,
1DIAGNOSTIC, 20, -9.385002569153e-01, 4.920976409169e-04, 2.2905e+01, 5.4330e-01,
1DIAGNOSTIC, 21, -9.393962629388e-01, 4.312589643690e-04, 2.3444e+01, 5.3822e-01,
1DIAGNOSTIC, 22, -9.402931223144e-01, 3.827406231920e-04, 2.3983e+01, 5.3944e-01,
1DIAGNOSTIC, 23, -9.410813931924e-01, 3.392801257946e-04, 2.4543e+01, 5.5975e-01,
1DIAGNOSTIC, 24, -9.419605784409e-01, 3.022244489143e-04, 2.5108e+01, 5.6537e-01,
1DIAGNOSTIC, 25, -9.430054468068e-01, 2.737753176668e-04, 2.5659e+01, 5.5068e-01,
1DIAGNOSTIC, 26, -9.437576912845e-01, 2.456628523470e-04, 2.6220e+01, 5.6067e-01,
1DIAGNOSTIC, 27, -9.446659883560e-01, 2.211321837393e-04, 2.6771e+01, 5.5124e-01,
1DIAGNOSTIC, 28, -9.454634641667e-01, 2.013543740026e-04, 2.7324e+01, 5.5333e-01,
1DIAGNOSTIC, 29, -9.462364335742e-01, 1.868205250169e-04, 2.7861e+01, 5.3646e-01,
1DIAGNOSTIC, 30, -9.468394205506e-01, 1.760569588794e-04, 2.8401e+01, 5.4009e-01,
1DIAGNOSTIC, 31, -9.474775708931e-01, 1.644630655952e-04, 2.8944e+01, 5.4294e-01,
1DIAGNOSTIC, 32, -9.481140811795e-01, 1.526820474647e-04, 2.9497e+01, 5.5393e-01,
1DIAGNOSTIC, 33, -9.485347035640e-01, 1.382811851308e-04, 3.0036e+01, 5.3871e-01,
1DIAGNOSTIC, 34, -9.491071348415e-01, 1.246216429252e-04, 3.0604e+01, 5.6755e-01,
1DIAGNOSTIC, 35, -9.496133926554e-01, 1.134493852253e-04, 3.1142e+01, 5.3820e-01,
1DIAGNOSTIC, 36, -9.501646760934e-01, 1.031157211820e-04, 3.1694e+01, 5.5223e-01,
1DIAGNOSTIC, 37, -9.506848599241e-01, 9.527016140922e-05, 3.2244e+01, 5.5005e-01,
1DIAGNOSTIC, 38, -9.512511351429e-01, 8.968918120748e-05, 3.2796e+01, 5.5225e-01,
1DIAGNOSTIC, 39, -9.517662383948e-01, 8.591267104028e-05, 3.3348e+01, 5.5143e-01,
1DIAGNOSTIC, 40, -9.522146777380e-01, 8.211395000633e-05, 3.3899e+01, 5.5119e-01,
1DIAGNOSTIC, 41, -9.525608848908e-01, 7.796106330716e-05, 3.4453e+01, 5.5348e-01,
1DIAGNOSTIC, 42, -9.529352443196e-01, 7.393431909992e-05, 3.4996e+01, 5.4369e-01,
1DIAGNOSTIC, 43, -9.533944716731e-01, 6.924355832055e-05, 3.5549e+01, 5.5305e-01,
1DIAGNOSTIC, 44, -9.538746253681e-01, 6.540433006314e-05, 3.6100e+01, 5.5055e-01,
1DIAGNOSTIC, 45, -9.542441295563e-01, 6.138823902275e-05, 3.6639e+01, 5.3909e-01,
1DIAGNOSTIC, 46, -9.546629435372e-01, 5.812096247019e-05, 3.7191e+01, 5.5169e-01,
1DIAGNOSTIC, 47, -9.550112399074e-01, 5.504126072002e-05, 3.7740e+01, 5.4929e-01,
1DIAGNOSTIC, 48, -9.553394823190e-01, 5.246454112409e-05, 3.8291e+01, 5.5067e-01,
1DIAGNOSTIC, 49, -9.557168837397e-01, 5.049028979549e-05, 3.8841e+01, 5.5081e-01,
1DIAGNOSTIC, 50, -9.560372377855e-01, 4.843615534082e-05, 3.9380e+01, 5.3890e-01,
1DIAGNOSTIC, 51, -9.562339750402e-01, 4.507530309621e-05, 3.9925e+01, 5.4425e-01,
1DIAGNOSTIC, 52, -9.564838541494e-01, 4.119244940787e-05, 4.0499e+01, 5.7420e-01,
1DIAGNOSTIC, 53, -9.567998357430e-01, 3.794233153459e-05, 4.1044e+01, 5.4530e-01,
1DIAGNOSTIC, 54, -9.569209969712e-01, 3.454257253985e-05, 4.1596e+01, 5.5171e-01,
1DIAGNOSTIC, 55, -9.572472487989e-01, 3.181150238073e-05, 4.2148e+01, 5.5192e-01,
1DIAGNOSTIC, 56, -9.574886812200e-01, 2.970817033233e-05, 4.2701e+01, 5.5363e-01,
1DIAGNOSTIC, 57, -9.578140885705e-01, 2.842349695030e-05, 4.3240e+01, 5.3912e-01,
1DIAGNOSTIC, 58, -9.580438029841e-01, 2.735795494732e-05, 4.3786e+01, 5.4589e-01,
1DIAGNOSTIC, 59, -9.582483130340e-01, 2.670634694460e-05, 4.4338e+01, 5.5147e-01,
1DIAGNOSTIC, 60, -9.584803692815e-01, 2.633519195141e-05, 4.4890e+01, 5.5196e-01,
1DIAGNOSTIC, 61, -9.587023227509e-01, 2.552901205238e-05, 4.5454e+01, 5.6406e-01,
1DIAGNOSTIC, 62, -9.589766512387e-01, 2.485182624793e-05, 4.6006e+01, 5.5170e-01,
1DIAGNOSTIC, 63, -9.590302701376e-01, 2.361397372561e-05, 4.6559e+01, 5.5298e-01,
1DIAGNOSTIC, 64, -9.593618563494e-01, 2.232398657087e-05, 4.7112e+01, 5.5316e-01,
1DIAGNOSTIC, 65, -9.593953152291e-01, 2.060224603887e-05, 4.7665e+01, 5.5329e-01,
1DIAGNOSTIC, 66, -9.596468120149e-01, 1.922908003960e-05, 4.8205e+01, 5.4053e-01,
1DIAGNOSTIC, 67, -9.598303720342e-01, 1.835161161194e-05, 4.8791e+01, 5.8518e-01,
1DIAGNOSTIC, 68, -9.600034805096e-01, 1.754671347318e-05, 4.9341e+01, 5.5074e-01,
1DIAGNOSTIC, 69, -9.600956826260e-01, 1.639956648033e-05, 4.9887e+01, 5.4566e-01,
1DIAGNOSTIC, 70, -9.603367067491e-01, 1.577703642558e-05, 5.0425e+01, 5.3791e-01,
XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
1DIAGNOSTIC, 1, -8.612681066539e-01, 1.797693134862e+308, 5.6054e+01, 5.6293e+00,
1DIAGNOSTIC, 2, -8.638959234509e-01, 1.797693134862e+308, 5.9725e+01, 3.6712e+00,
1DIAGNOSTIC, 3, -8.672190340766e-01, 1.797693134862e+308, 6.3316e+01, 3.5907e+00,
1DIAGNOSTIC, 4, -8.701297027998e-01, 1.797693134862e+308, 6.6837e+01, 3.5210e+00,
1DIAGNOSTIC, 5, -8.727698312613e-01, 1.797693134862e+308, 7.0436e+01, 3.5993e+00,
1DIAGNOSTIC, 6, -8.751996854597e-01, 1.797693134862e+308, 7.3945e+01, 3.5081e+00,
1DIAGNOSTIC, 7, -8.774389791025e-01, 1.797693134862e+308, 7.7552e+01, 3.6073e+00,
1DIAGNOSTIC, 8, -8.795601435463e-01, 1.797693134862e+308, 8.1072e+01, 3.5201e+00,
1DIAGNOSTIC, 9, -8.814828215213e-01, 1.797693134862e+308, 8.4532e+01, 3.4601e+00,
1DIAGNOSTIC, 10, -8.832598218323e-01, 1.625152249332e-03, 8.8119e+01, 3.5867e+00,
1DIAGNOSTIC, 11, -8.849502928275e-01, 1.379410579229e-03, 9.1951e+01, 3.8323e+00,
1DIAGNOSTIC, 12, -8.863467844847e-01, 1.158707273396e-03, 9.5623e+01, 3.6724e+00,
1DIAGNOSTIC, 13, -8.874894699823e-01, 9.780624631032e-04, 9.9287e+01, 3.6640e+00,
1DIAGNOSTIC, 14, -8.885747391724e-01, 8.263731264974e-04, 1.0310e+02, 3.8164e+00,
1DIAGNOSTIC, 15, -8.896155383461e-01, 6.983811445080e-04, 1.0698e+02, 3.8756e+00,
1DIAGNOSTIC, 16, -8.906175158595e-01, 5.912025980027e-04, 1.1077e+02, 3.7954e+00,
1DIAGNOSTIC, 17, -8.915667682181e-01, 5.023918693520e-04, 1.1446e+02, 3.6816e+00,
1DIAGNOSTIC, 18, -8.924494849970e-01, 4.306486476437e-04, 1.1812e+02, 3.6645e+00,
1DIAGNOSTIC, 19, -8.932748419925e-01, 3.729519212310e-04, 1.2190e+02, 3.7780e+00,
1DIAGNOSTIC, 20, -8.940560611662e-01, 3.272730155618e-04, 1.2564e+02, 3.7447e+00,
1DIAGNOSTIC, 21, -8.948006917497e-01, 2.925573239187e-04, 1.2940e+02, 3.7542e+00,
1DIAGNOSTIC, 22, -8.955012808791e-01, 2.642104491872e-04, 1.3318e+02, 3.7826e+00,
1DIAGNOSTIC, 23, -8.961970712452e-01, 2.391946618151e-04, 1.3701e+02, 3.8329e+00,
1DIAGNOSTIC, 24, -8.968700747574e-01, 2.172724326163e-04, 1.4063e+02, 3.6118e+00,
1DIAGNOSTIC, 25, -8.975017137524e-01, 1.980795967423e-04, 1.4436e+02, 3.7342e+00,
1DIAGNOSTIC, 26, -8.980965316338e-01, 1.813587712898e-04, 1.4805e+02, 3.6920e+00,
1DIAGNOSTIC, 27, -8.986831746819e-01, 1.669738814132e-04, 1.5201e+02, 3.9574e+00,
1DIAGNOSTIC, 28, -8.992252895665e-01, 1.541131005198e-04, 1.5568e+02, 3.6747e+00,
1DIAGNOSTIC, 29, -8.997689144991e-01, 1.426562866366e-04, 1.5938e+02, 3.6928e+00,
1DIAGNOSTIC, 30, -9.002428585255e-01, 1.318263319391e-04, 1.6311e+02, 3.7382e+00,
1DIAGNOSTIC, 31, -9.007375115992e-01, 1.219963754064e-04, 1.6691e+02, 3.7989e+00,
1DIAGNOSTIC, 32, -9.011863290206e-01, 1.126773959610e-04, 1.7052e+02, 3.6044e+00,
1DIAGNOSTIC, 33, -9.016451488733e-01, 1.043970900119e-04, 1.7428e+02, 3.7634e+00,
1DIAGNOSTIC, 34, -9.020785213759e-01, 9.707093829395e-05, 1.7789e+02, 3.6058e+00,
1DIAGNOSTIC, 35, -9.024655693161e-01, 9.022830806962e-05, 1.8168e+02, 3.7970e+00,
1DIAGNOSTIC, 36, -9.028373283458e-01, 8.375770453501e-05, 1.8530e+02, 3.6126e+00,
1DIAGNOSTIC, 37, -9.031953080006e-01, 7.781524169687e-05, 1.8902e+02, 3.7275e+00,
1DIAGNOSTIC, 38, -9.035493016626e-01, 7.228987028418e-05, 1.9285e+02, 3.8238e+00,
1DIAGNOSTIC, 39, -9.038869712394e-01, 6.737086532679e-05, 1.9659e+02, 3.7376e+00,
1DIAGNOSTIC, 40, -9.042308986401e-01, 6.279712614010e-05, 2.0029e+02, 3.7094e+00,
1DIAGNOSTIC, 41, -9.045193462345e-01, 5.855432077792e-05, 2.0410e+02, 3.8060e+00,
1DIAGNOSTIC, 42, -9.048365568544e-01, 5.474821455367e-05, 2.0779e+02, 3.6912e+00,
1DIAGNOSTIC, 43, -9.051437639334e-01, 5.156685757195e-05, 2.1156e+02, 3.7654e+00,
1DIAGNOSTIC, 44, -9.054260747574e-01, 4.878980935761e-05, 2.1529e+02, 3.7287e+00,
1DIAGNOSTIC, 45, -9.057030700983e-01, 4.618628224453e-05, 2.1898e+02, 3.6981e+00,
1DIAGNOSTIC, 46, -9.059721629173e-01, 4.373213569231e-05, 2.2265e+02, 3.6692e+00,
1DIAGNOSTIC, 47, -9.062191344473e-01, 4.130891037291e-05, 2.2648e+02, 3.8310e+00,
1DIAGNOSTIC, 48, -9.065110954098e-01, 3.932966316791e-05, 2.3010e+02, 3.6190e+00,
1DIAGNOSTIC, 49, -9.067423857343e-01, 3.736282529810e-05, 2.3391e+02, 3.8068e+00,
1DIAGNOSTIC, 50, -9.070037888985e-01, 3.577420897650e-05, 2.3782e+02, 3.9118e+00,
Elapsed time (stage 2): 242.7

Total elapsed time: 301

Apply linear transform to T1
antsApplyTransforms -d 3 -i /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.2rM5DDNdfq/ANTS0GenericAffine.mat -o /tmp/tmp.2rM5DDNdfq/T1_norm_lin_atlas_2_5.nii.gz

Apply linear transform to distorted b0
antsApplyTransforms -d 3 -i /INPUTS/b0.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.2rM5DDNdfq/ANTS0GenericAffine.mat -t /tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt -o /tmp/tmp.2rM5DDNdfq/b0_d_lin_atlas_2_5.nii.gz
Transform file does not exist: /tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt

Apply nonlinear transform to T1
antsApplyTransforms -d 3 -i /tmp/tmp.2rM5DDNdfq/T1_norm.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.2rM5DDNdfq/ANTS1Warp.nii.gz -t /tmp/tmp.2rM5DDNdfq/ANTS0GenericAffine.mat -o /tmp/tmp.2rM5DDNdfq/T1_norm_nonlin_atlas_2_5.nii.gz

Apply nonlinear transform to distorted b0
antsApplyTransforms -d 3 -i /INPUTS/b0.nii.gz -r /extra/atlases/mni_icbm152_t1_tal_nlin_asym_09c_2_5.nii.gz -n BSpline -t /tmp/tmp.2rM5DDNdfq/ANTS1Warp.nii.gz -t /tmp/tmp.2rM5DDNdfq/ANTS0GenericAffine.mat -t /tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt -o /tmp/tmp.2rM5DDNdfq/b0_d_nonlin_atlas_2_5.nii.gz
Transform file does not exist: /tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt

Copying results to results path...
cp: cannot stat '/tmp/tmp.2rM5DDNdfq/epi_reg_d.mat': No such file or directory
cp: cannot stat '/tmp/tmp.2rM5DDNdfq/epi_reg_d_ANTS.txt': No such file or directory
cp: cannot stat '/tmp/tmp.2rM5DDNdfq/b0_d_lin_atlas_2_5.nii.gz': No such file or directory
cp: cannot stat '/tmp/tmp.2rM5DDNdfq/b0_d_nonlin_atlas_2_5.nii.gz': No such file or directory

Removing job directory...
Performing inference on FOLD: 1
T1 input path: /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz
b0 input path: /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz
b0 output path: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_1.nii.gz
Model path: /extra/dual_channel_unet/num_fold_1_total_folds_5_seed_1_num_epochs_100_lr_0.0001_betas_(0.9, 0.999)_weight_decay_1e-05_num_epoch_97.pth
Traceback (most recent call last):
File "/extra/pytorch/lib/python3.6/site-packages/nibabel/loadsave.py", line 40, in load
stat_result = os.stat(filename)
FileNotFoundError: [Errno 2] No such file or directory: '/OUTPUTS/b0_d_lin_atlas_2_5.nii.gz'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/extra/inference.py", line 90, in
img_model = inference(T1_input_path, b0_input_path, model, device)
File "/extra/inference.py", line 32, in inference
img_b0_d = np.expand_dims(util.get_nii_img(b0_d_path), axis=3)
File "/extra/util.py", line 24, in get_nii_img
nii = nib.load(path_nii)
File "/extra/pytorch/lib/python3.6/site-packages/nibabel/loadsave.py", line 42, in load
raise FileNotFoundError("No such file or no access: '%s'" % filename)
FileNotFoundError: No such file or no access: '/OUTPUTS/b0_d_lin_atlas_2_5.nii.gz'
Performing inference on FOLD: 2
T1 input path: /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz
b0 input path: /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz
b0 output path: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_2.nii.gz
Model path: /extra/dual_channel_unet/num_fold_2_total_folds_5_seed_1_num_epochs_100_lr_0.0001_betas_(0.9, 0.999)_weight_decay_1e-05_num_epoch_98.pth
Traceback (most recent call last):
File "/extra/pytorch/lib/python3.6/site-packages/nibabel/loadsave.py", line 40, in load
stat_result = os.stat(filename)
FileNotFoundError: [Errno 2] No such file or directory: '/OUTPUTS/b0_d_lin_atlas_2_5.nii.gz'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/extra/inference.py", line 90, in
img_model = inference(T1_input_path, b0_input_path, model, device)
File "/extra/inference.py", line 32, in inference
img_b0_d = np.expand_dims(util.get_nii_img(b0_d_path), axis=3)
File "/extra/util.py", line 24, in get_nii_img
nii = nib.load(path_nii)
File "/extra/pytorch/lib/python3.6/site-packages/nibabel/loadsave.py", line 42, in load
raise FileNotFoundError("No such file or no access: '%s'" % filename)
FileNotFoundError: No such file or no access: '/OUTPUTS/b0_d_lin_atlas_2_5.nii.gz'
Performing inference on FOLD: 3
T1 input path: /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz
b0 input path: /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz
b0 output path: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_3.nii.gz
Model path: /extra/dual_channel_unet/num_fold_3_total_folds_5_seed_1_num_epochs_100_lr_0.0001_betas_(0.9, 0.999)_weight_decay_1e-05_num_epoch_90.pth
Traceback (most recent call last):
File "/extra/pytorch/lib/python3.6/site-packages/nibabel/loadsave.py", line 40, in load
stat_result = os.stat(filename)
FileNotFoundError: [Errno 2] No such file or directory: '/OUTPUTS/b0_d_lin_atlas_2_5.nii.gz'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/extra/inference.py", line 90, in
img_model = inference(T1_input_path, b0_input_path, model, device)
File "/extra/inference.py", line 32, in inference
img_b0_d = np.expand_dims(util.get_nii_img(b0_d_path), axis=3)
File "/extra/util.py", line 24, in get_nii_img
nii = nib.load(path_nii)
File "/extra/pytorch/lib/python3.6/site-packages/nibabel/loadsave.py", line 42, in load
raise FileNotFoundError("No such file or no access: '%s'" % filename)
FileNotFoundError: No such file or no access: '/OUTPUTS/b0_d_lin_atlas_2_5.nii.gz'
Performing inference on FOLD: 4
T1 input path: /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz
b0 input path: /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz
b0 output path: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_4.nii.gz
Model path: /extra/dual_channel_unet/num_fold_4_total_folds_5_seed_1_num_epochs_100_lr_0.0001_betas_(0.9, 0.999)_weight_decay_1e-05_num_epoch_90.pth
Traceback (most recent call last):
File "/extra/pytorch/lib/python3.6/site-packages/nibabel/loadsave.py", line 40, in load
stat_result = os.stat(filename)
FileNotFoundError: [Errno 2] No such file or directory: '/OUTPUTS/b0_d_lin_atlas_2_5.nii.gz'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/extra/inference.py", line 90, in
img_model = inference(T1_input_path, b0_input_path, model, device)
File "/extra/inference.py", line 32, in inference
img_b0_d = np.expand_dims(util.get_nii_img(b0_d_path), axis=3)
File "/extra/util.py", line 24, in get_nii_img
nii = nib.load(path_nii)
File "/extra/pytorch/lib/python3.6/site-packages/nibabel/loadsave.py", line 42, in load
raise FileNotFoundError("No such file or no access: '%s'" % filename)
FileNotFoundError: No such file or no access: '/OUTPUTS/b0_d_lin_atlas_2_5.nii.gz'
Performing inference on FOLD: 5
T1 input path: /OUTPUTS/T1_norm_lin_atlas_2_5.nii.gz
b0 input path: /OUTPUTS/b0_d_lin_atlas_2_5.nii.gz
b0 output path: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_5.nii.gz
Model path: /extra/dual_channel_unet/num_fold_5_total_folds_5_seed_1_num_epochs_100_lr_0.0001_betas_(0.9, 0.999)_weight_decay_1e-05_num_epoch_88.pth
Traceback (most recent call last):
File "/extra/pytorch/lib/python3.6/site-packages/nibabel/loadsave.py", line 40, in load
stat_result = os.stat(filename)
FileNotFoundError: [Errno 2] No such file or directory: '/OUTPUTS/b0_d_lin_atlas_2_5.nii.gz'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/extra/inference.py", line 90, in
img_model = inference(T1_input_path, b0_input_path, model, device)
File "/extra/inference.py", line 32, in inference
img_b0_d = np.expand_dims(util.get_nii_img(b0_d_path), axis=3)
File "/extra/util.py", line 24, in get_nii_img
nii = nib.load(path_nii)
File "/extra/pytorch/lib/python3.6/site-packages/nibabel/loadsave.py", line 42, in load
raise FileNotFoundError("No such file or no access: '%s'" % filename)
FileNotFoundError: No such file or no access: '/OUTPUTS/b0_d_lin_atlas_2_5.nii.gz'
Taking ensemble average
Image Exception : #63 :: No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_*
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_*
/extra/pipeline.sh: line 34: 1479 Aborted (core dumped) fslmerge -t /OUTPUTS/b0_u_lin_atlas_2_5_merged.nii.gz /OUTPUTS/b0_u_lin_atlas_2_5_FOLD_*.nii.gz
Image Exception : #63 :: No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_merged
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: /OUTPUTS/b0_u_lin_atlas_2_5_merged
/extra/pipeline.sh: line 35: 1480 Aborted (core dumped) fslmaths /OUTPUTS/b0_u_lin_atlas_2_5_merged.nii.gz -Tmean /OUTPUTS/b0_u_lin_atlas_2_5.nii.gz
Applying inverse xform to undistorted b0
file /OUTPUTS/b0_u_lin_atlas_2_5.nii.gz does not exist .
Transform file does not exist: /OUTPUTS/epi_reg_d_ANTS.txt
Applying slight smoothing to distorted b0
Running topup
Image Exception : #63 :: No image files match: /OUTPUTS/b0_u
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: /OUTPUTS/b0_u
/extra/pipeline.sh: line 47: 1487 Aborted (core dumped) fslmerge -t /OUTPUTS/b0_all.nii.gz /OUTPUTS/b0_d_smooth.nii.gz /OUTPUTS/b0_u.nii.gz
Image Exception : #63 :: No image files match: /OUTPUTS/b0_all
Image Exception : #22 :: Failed to read volume /OUTPUTS/b0_all.nii.gz
Error : No image files match: /OUTPUTS/b0_all

Part of FSL (ID: 6.0.1)
topup

Usage:
topup --imain=<some 4D image> --datain= --config= --out=my_topup_results

Compulsory arguments (You MUST set one or more of):
--imain name of 4D file with images
--datain name of text file with PE directions/times

Optional arguments (You may optionally specify one or more of):
--out base-name of output files (spline coefficients (Hz) and movement parameters)
--fout name of image file with field (Hz)
--iout name of 4D image file with unwarped images
--logout Name of log-file
--warpres (approximate) resolution (in mm) of warp basis for the different sub-sampling levels, default 10
--subsamp sub-sampling scheme, default 1
--fwhm FWHM (in mm) of gaussian smoothing kernel, default 8
--config Name of config file specifying command line arguments
--miter Max # of non-linear iterations, default 5
--lambda Weight of regularisation, default depending on --ssqlambda and --regmod switches. See user documetation.
--ssqlambda If set (=1), lambda is weighted by current ssq, default 1
--regmod Model for regularisation of warp-field [membrane_energy bending_energy], default bending_energy
--estmov Estimate movements if set, default 1 (true)
--minmet Minimisation method 0=Levenberg-Marquardt, 1=Scaled Conjugate Gradient, default 0 (LM)
--splineorder Order of spline, 2->Qadratic spline, 3->Cubic spline. Default=3
--numprec Precision for representing Hessian, double or float. Default double
--interp Image interpolation model, linear or spline. Default spline
--scale If set (=1), the images are individually scaled to a common mean, default 0 (false)
--regrid If set (=1), the calculations are done in a different grid, default 1 (true)
-h,--help display help info
-v,--verbose Print diagonostic information while running
-h,--help display help info

Failed to read volume /OUTPUTS/b0_all.nii.gz
Error : No image files match: /OUTPUTS/b0_all
FINISHED!!!

[ahilderley]

did you resolve the "Image Exception : #63"?