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I have successfully run Synb0 and am preparing to feed the data in EDDY. I was wondering in order to create a brain mask for EDDY, should I be using the Synb0 output for this? if so, which file?
Thank you for your help,
The text was updated successfully, but these errors were encountered:
The current Synb0 output does not include a brain mask. We do run bet to skullstrip the T1 image, but we don't save the mask itself. Anyways you would want a mask in the same space as your diffusion data not the T1. The easiest thing to do would be to use bet to get a mask using your topup corrected b0 image.
Hi team,
I have successfully run Synb0 and am preparing to feed the data in EDDY. I was wondering in order to create a brain mask for EDDY, should I be using the Synb0 output for this? if so, which file?
Thank you for your help,
The text was updated successfully, but these errors were encountered: