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Cannot Reproduce DNA-BERT2‘s Result #86

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KatarinaYuan opened this issue May 8, 2024 · 1 comment
Closed

Cannot Reproduce DNA-BERT2‘s Result #86

KatarinaYuan opened this issue May 8, 2024 · 1 comment

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@KatarinaYuan
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Hi,
I try to run the command in ./DNABERT_2/finetune/scripts/run_dnabert2.sh and get the following results. However, it cannot match the reported ones in DNA-BERT2's paper.

Screen Shot 2024-05-07 at 10 44 19 PM
@Zhihan1996
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Can you specify the hyperparameters you are using? For example, this scripts expect 4 GPUs for a suitable batch size and training steps.

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@KatarinaYuan @Zhihan1996