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If I have a data matrix that looks like this to serve as input into COB.from_table.
R1M-C2
R2M-C2
R3M-C2
R1T-C2
BDIBD21-3.1G0000700
0.440474
0.255481
0.312441
BDIBD21-3.1G0000800
1.41546
2.19172
2.00877
BDIBD21-3.1G0000900
0.0210054
0
0.0714931
BDIBD21-3.1G0001000
0
0
0
That command converts the gene names to something like BDIBD213.1G000290 before testing membership where the hyphen gets removed. This change ends up filtering out all of the genes since they don't match the RefGen gene names that include the hyphen.
The text was updated successfully, but these errors were encountered:
I don't know if I did this or someone else, but if you change the regexp it should work, but I can't speak to the downstream effects of that, I looked and remembered having issues with column labels in bColz (see solution to that problem a couple lines above), but not specifically in the columns themselves.
If I have a data matrix that looks like this to serve as input into COB.from_table.
That command converts the gene names to something like BDIBD213.1G000290 before testing membership where the hyphen gets removed. This change ends up filtering out all of the genes since they don't match the RefGen gene names that include the hyphen.
The text was updated successfully, but these errors were encountered: