diff --git a/Cyverse/Dockerfile b/Cyverse/Dockerfile deleted file mode 100644 index 75e2455..0000000 --- a/Cyverse/Dockerfile +++ /dev/null @@ -1,44 +0,0 @@ -FROM ubuntu:16.04 -MAINTAINER Rob -LABEL Description "Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes." - -RUN apt-get -y update && apt-get install -y \ - curl \ - lsb-release \ - wget \ - git \ - gcc \ - build-essential \ - libqt5gui5 \ - apt-transport-https \ - python3 - -RUN mkdir -p /src/ && \ - mkdir -p /data/ && \ - mkdir -p /cobdata/ && \ - cd /src/ && \ - git clone https://github.com/LinkageIO/Camoco.git && \ - cd Camoco/ && \ - ./install.sh - -# Activate the camoco env -ENV PATH=$HOME/.camoco/bin/:$PATH -RUN /bin/bash -c "source $HOME/.camoco/conda/bin/activate camoco" - -ENV LD_LIBRARY_PATH=/root/.camoco/lib:$LD_LIBRARY_PATH -ENV PATH=/root/.camoco/bin:/root/.camoco/conda/envs/camoco/bin:$PATH - -RUN cd /src/Camoco - -# Build a refgen -RUN camoco build-refgen \ - /src/Camoco/tests/raw/RefGen/ZmB73_5b_FGS.gff.gz \ - "Zm5bFGS" "Maize FGS" 5b "Zea mays" -# Build a COB -RUN camoco build-cob \ - /src/Camoco/tests/raw/Expr/RNASEQ/MaizeRNASeqTissue.tsv.bz2 \ - ZmTissue "Sekhon et el Tissue Atlas" \ - Zm5bFGS --rawtype RNASEQ - -#ENTRYPOINT [ "/bin/bash" ] -ENTRYPOINT [ "/root/.camoco/conda/envs/camoco/bin/camoco" ]