[Enhancement]: Use mod folders

[Arkhorse]

Describe the new feature or enhancement

BepInEx uses mod folders, which allows for things like a mod.json, which can define things like if the mod is enabled or any other things that game needs. Doing this in ML would make things easier to manage for both mod makers and mod users.

[RinLovesYou]

Planned for the rewrite 👍🏻