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Collect pt3d info per segment, not per section #337

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espenhgn opened this issue Jun 16, 2021 · 1 comment
Open

Collect pt3d info per segment, not per section #337

espenhgn opened this issue Jun 16, 2021 · 1 comment

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@espenhgn
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espenhgn commented Jun 16, 2021

Is your feature request related to a problem? Please describe.
Now, the pt3d info is collected per NEURON Section object (in LFPy.Cell._collect_pt3d() as we've mostly used this info for plotting, not predictions.

It would be better if we could approximately map the fine geometrical detail which may be present in the reconstructed morphology files to the corresponding segment reference, so that it can be used a bit more readily for FM predictions. This would imply that we can consider each segment as a series of conical frusta (as do Arbor) with constant transmembrane current per area.

@espenhgn espenhgn self-assigned this Jun 16, 2021
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This issue appears to be stale due to non-activity and will be closed automatically

@espenhgn espenhgn added this to the v2.3 milestone Sep 29, 2021
@espenhgn espenhgn reopened this Aug 1, 2022
@espenhgn espenhgn modified the milestones: v2.3, v2.4 Dec 14, 2022
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