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html_header.php
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html_header.php
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<!DOCTYPE HTML>
<html>
<head>
<title>Seave</title>
<html lang="en">
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
<meta name="description" content="" />
<meta name="keywords" content="" />
<!--[if lte IE 8]><script src="css/ie/html5shiv.js"></script><![endif]-->
<script src="js/jquery.min.js"></script>
<script src="js/jquery.dropotron.min.js"></script>
<script src="js/skel.min.js"></script>
<script src="js/skel-layers.min.js"></script>
<script src="js/init.js"></script>
<noscript>
<link rel="stylesheet" href="css/skel.css" />
<link rel="stylesheet" href="css/style.css" />
</noscript>
<!--[if lte IE 8]><link rel="stylesheet" href="css/ie/v8.css" /><![endif]-->
</head>
<body class="<?php echo $body_class; ?>">
<!-- Header -->
<div id="header-wrapper">
<div id="header" class="container">
<!-- Logo -->
<h1 id="logo">
<a href="home">Seave
<?php
// If the current Seave deployment is for development/testing purposes
if ($GLOBALS["configuration_file"]["version"]["name"] == "dev") {
echo "<div class=\"subtitle\">Development</div>";
// If the current Seave deployment is for training purposes
} elseif ($GLOBALS["configuration_file"]["version"]["name"] == "training") {
echo "<div class=\"subtitle\">Training</div>";
// The default Seave version is for research use only
} else {
echo "<div class=\"subtitle\">Research</div>";
}
?>
</a>
</h1>
<!-- Nav -->
<nav id="nav">
<ul>
<?php
// If the user is an administrator, display administration options in a dropdown
if (is_user_administrator()) {
?>
<li>
<a href="databases?restart=true">Databases</a>
<ul>
<li><a href="databases">Databases</a></li>
<li><a href="database_administration">Database Administration</a></li>
<li><a href="user_administration">User Administration</a></li>
<li><a href="gene_list_administration">Gene List Administration</a></li>
<li><a href="gbs_administration">GBS Administration</a></li>
</ul>
</li>
<?php
// If the user is not an administrator, don't display any sub-options
} else {
?>
<li><a href="databases?restart=true">Databases</a></li>
<?php
}
?>
<li>
<a href="familial_filters">Familial Filters</a>
<ul>
<li><a href="familial_filters#het_dom">Heterozygous Dominant</a></li>
<li><a href="familial_filters#hom_rec">Homozygous Recessive</a></li>
<li><a href="familial_filters#comp_het">Compound Heterozygous</a></li>
<li><a href="familial_filters#de_novo_dom">De Novo Dominant</a></li>
</ul>
</li>
<li class="break">
<a href="data_sources">Data Sources</a>
<ul>
<li><a href="data_sources">External Annotations</a></li>
<li><a href="gbs">Genome Block Store</a></li>
</ul>
</li>
<?php
if (is_user_logged_in()) {
echo "<li><a href=\"logout\">Log Out</a></li>";
} else {
echo "<li><a href=\"login\">Log In</a></li>";
}
?>
</ul>
</nav>
</div>