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Kernel hangs after itkwidgets visualization in jupyter notebook #743

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KumoLiu opened this issue Apr 17, 2024 · 1 comment
Open

Kernel hangs after itkwidgets visualization in jupyter notebook #743

KumoLiu opened this issue Apr 17, 2024 · 1 comment

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@KumoLiu
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KumoLiu commented Apr 17, 2024

  • kernal hangs after view function in the notebook.
  1. docker pull nvcr.io/nvidia/pytorch:24.03-py3
  2. run the example, kernal hangs after view called.
  • After install itkwidgets[notebook]>=1.0a49, look like there will be a requirement compatibility issues for pandas, not sure whether it's related the issue.
Collecting pandas>=2.0.0 (from dask-image->ngff-zarr[dask-image]>=0.4.3->itkwidgets>=1.0a49->itkwidgets[notebook]>=1.0a49)
  Downloading pandas-2.2.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
cudf 24.2.0 requires pandas<1.6.0dev0,>=1.3, but you have pandas 2.2.2 which is incompatible.
dask-cuda 24.2.0 requires pandas<1.6.0.dev0,>=1.3, but you have pandas 2.2.2 which is incompatible.
dask-cudf 24.2.0 requires pandas<1.6.0dev0,>=1.3, but you have pandas 2.2.2 which is incompatible.
  • After install the itkwidgets and exiting the Jupyter notebook, trying to launch the notebook again leads to a configuration error. It appears that the installation of itkwidgets is causing a disruption in the configuration settings.
Screen Shot 2024-04-17 at 15 51 33
@thewtex
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thewtex commented Apr 17, 2024

Addressed with #745

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