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Failed Test #166

Closed
x3oo opened this issue Aug 20, 2021 · 42 comments
Closed

Failed Test #166

x3oo opened this issue Aug 20, 2021 · 42 comments
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@x3oo
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x3oo commented Aug 20, 2021

(sharpy_env) [buttermelted@thinkpad sharpy]$ python -m unittest
running unittest
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)
running unittest
EEEE.EEEEEEEEEEEsE.EE./home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/h5py/_hl/dataset.py:541: DeprecationWarning: Passing None into shape arguments as an alias for () is deprecated.
arr = numpy.ndarray(selection.mshape, dtype=new_dtype)
...EE..........E.E

ERROR: sharpy.generators (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.generators
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/sharpy/generators/init.py", line 25, in
generator_interface.generators[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/generators/gridbox.py", line 6, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: sharpy.linear.assembler (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.linear.assembler
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/sharpy/linear/assembler/init.py", line 16, in
ss_interface.systems_dict_import[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/linear/assembler/linearbeam.py", line 7, in
import sharpy.linear.src.lingebm as lingebm
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/lingebm.py", line 15, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: sharpy.postproc (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.postproc
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/sharpy/postproc/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/postproc/aerogridplot.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: sharpy.solvers (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.solvers
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_doublependulum (tests.coupled.multibody.double_pendulum.test_double_pendulum_geradin.TestDoublePendulum)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/multibody/double_pendulum/test_double_pendulum_geradin.py", line 209, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_testfixnodevelocitywrta (tests.coupled.multibody.fix_node_velocity_wrtA.test_fix_node_velocity_wrtA.TestFixNodeVelocitywrtA)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/multibody/fix_node_velocity_wrtA/test_fix_node_velocity_wrtA.py", line 61, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_testfixnodevelocitywrtg (tests.coupled.multibody.fix_node_velocity_wrtG.test_fix_node_velocity_wrtG.TestFixNodeVelocitywrtG)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/multibody/fix_node_velocity_wrtG/test_fix_node_velocity_wrtG.py", line 63, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_rotor (tests.coupled.prescribed.WindTurbine.test_rotor.TestRotor)

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/prescribed/WindTurbine/test_rotor.py", line 82, in setUp
options)
File "/home/buttermelted/bin/sharpy/cases/templates/template_wt.py", line 183, in rotor_from_excel_type03
rR_structural = gc.read_column_sheet_type01(excel_file_name, excel_sheet_structural_blade, 'rR')
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 166, in read_column_sheet_type01
xls = pd.ExcelFile(excel_file_name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_base.py", line 1233, in init
self._reader = self._engines[engine](self._io, storage_options=storage_options)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_openpyxl.py", line 521, in init
import_optional_dependency("openpyxl")
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/compat/_optional.py", line 118, in import_optional_dependency
raise ImportError(msg) from None
ImportError: Missing optional dependency 'openpyxl'. Use pip or conda to install openpyxl.

======================================================================
ERROR: test_static_aoa (tests.coupled.static.test_pazy_static.TestPazyCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_pazy_static.py", line 33, in test_static_aoa
Msf=Msf)
File "/home/buttermelted/bin/sharpy/tests/coupled/static/pazy/generate_pazy.py", line 136, in generate_pazy
sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_smith2deg_g (tests.coupled.static.test_static.TestCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_static.py", line 65, in test_smith2deg_g
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_smith2deg_nog (tests.coupled.static.test_static.TestCoupledStatic)
Case and results from:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_static.py", line 40, in test_smith2deg_nog
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_smith4deg_g (tests.coupled.static.test_static.TestCoupledStatic)
Case from R. Simpson's PhD thesis.

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_static.py", line 85, in test_smith4deg_g
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_smith4deg_nog (tests.coupled.static.test_static.TestCoupledStatic)
Hodges result for Euler+Nonlinear is

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_static.py", line 115, in test_smith4deg_nog
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_dynamic_aoa (tests.io.test_pazy_udpout.TestPazyCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/io/test_pazy_udpout.py", line 32, in test_dynamic_aoa
cd=self.route_test_dir)
File "/home/buttermelted/bin/sharpy/tests/io/generate_pazy_udpout.py", line 338, in generate_pazy_udp
sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: tests.linear.assembly.test_assembly (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.assembly.test_assembly
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/tests/linear/assembly/test_assembly.py", line 15, in
import sharpy.linear.src.assembly as assembly
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/assembly.py", line 22, in
from sharpy.aero.utils.uvlmlib import dvinddzeta_cpp, eval_panel_cpp
File "/home/buttermelted/bin/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: tests.linear.derivatives.test_ders (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.derivatives.test_ders
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/tests/linear/derivatives/test_ders.py", line 9, in
import sharpy.aero.utils.uvlmlib
File "/home/buttermelted/bin/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_flutter (tests.linear.goland_wing.test_goland_flutter.TestGolandFlutter)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 285, in test_flutter
self.setup()
File "/home/buttermelted/bin/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 246, in setup
self.data = sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_flutter (tests.linear.goland_wing.test_goland_flutter.TestGolandFlutter)

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 293, in tearDown
shutil.rmtree(self.route_test_dir + '/' + folder)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/shutil.py", line 485, in rmtree
onerror(os.lstat, path, sys.exc_info())
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/shutil.py", line 483, in rmtree
orig_st = os.lstat(path)
FileNotFoundError: [Errno 2] No such file or directory: '/home/buttermelted/bin/sharpy/tests/linear/goland_wing/output'

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [Direct]

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [FrequencyLimited]

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [Iterative]

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: tests.linear.rom.test_springmasssystem (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.rom.test_springmasssystem
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/tests/linear/rom/test_springmasssystem.py", line 10, in
import sharpy.linear.src.lingebm as lingebm
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/lingebm.py", line 15, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: tests.linear.uvlm.test_infinite_span (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.uvlm.test_infinite_span
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/tests/linear/uvlm/test_infinite_span.py", line 19, in
import sharpy.linear.src.linuvlm as linuvlm
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/linuvlm.py", line 27, in
import sharpy.linear.src.multisurfaces as multisurfaces
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/multisurfaces.py", line 8, in
import sharpy.linear.src.surface as surface
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/surface.py", line 10, in
import sharpy.aero.utils.uvlmlib as uvlmlib # SHARPy's main uvlm interface with cpp
File "/home/buttermelted/bin/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_generatecases (tests.utils.test_generate_cases.TestGenerateCases)

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/utils/test_generate_cases.py", line 81, in setUp
options)
File "/home/buttermelted/bin/sharpy/cases/templates/template_wt.py", line 183, in rotor_from_excel_type03
rR_structural = gc.read_column_sheet_type01(excel_file_name, excel_sheet_structural_blade, 'rR')
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 166, in read_column_sheet_type01
xls = pd.ExcelFile(excel_file_name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_base.py", line 1233, in init
self._reader = self._engines[engine](self._io, storage_options=storage_options)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_openpyxl.py", line 521, in init
import_optional_dependency("openpyxl")
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/compat/_optional.py", line 118, in import_optional_dependency
raise ImportError(msg) from None
ImportError: Missing optional dependency 'openpyxl'. Use pip or conda to install openpyxl.

======================================================================
ERROR: test_geradin (tests.xbeam.test_xbeam.TestGeradinXbeam)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/xbeam/test_xbeam.py", line 28, in test_geradin
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org


Ran 40 tests in 1.356s

FAILED (errors=25, skipped=1)

a lot of missing files and packages

@x3oo
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x3oo commented Aug 20, 2021

tried rebuildin sharpy:
CMake Warning at lib/UVLM/CMakeLists.txt:11 (add_library):
Cannot generate a safe runtime search path for target uvlm because files in
some directories may conflict with libraries in implicit directories:

runtime library [libgomp.so.1] in /usr/lib may be hidden by files in:
  /home/buttermelted/.conda/envs/sharpy_env/lib

Some of these libraries may not be found correctly.

@x3oo
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x3oo commented Aug 20, 2021

conda is up to date, i am on archlinux

@x3oo
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x3oo commented Aug 20, 2021

i tried cmake with deactivated conda environment, i get the same warning:
CMake Warning at lib/xbeam/CMakeLists.txt:12 (add_library):
Cannot generate a safe runtime search path for target xbeam because files
in some directories may conflict with libraries in implicit directories:

runtime library [libgomp.so.1] in /usr/lib may be hidden by files in:
  /home/buttermelted/.conda/envs/sharpy_env/lib

Some of these libraries may not be found correctly.

@ArturoMS13
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Collaborator

Dear x3oo,

there seems to be a problem with the setup of the conda environment.
Can you follow these steps and report us on them?

  • Report which branch (of sharpy, uvlm and xbeam) you are in. You can run the command "git status" in the sharpy folder.
  • Remove the conda environment. You can use this command "conda env remove --name sharpy_env".
  • Install the conda environment again according to: https://ic-sharpy.readthedocs.io/en/master/content/installation.html#setting-up-the-python-environment
  • Remove the "build" folder and install sharpy again, always with the conda environment activated. Report the output of the "make install" command

Thank you

@x3oo
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x3oo commented Aug 20, 2021

i did try to reinstall it according to the seps in the documentation with the same effect.
i am on archlinux.
pacman -Qi anaconda

Name : anaconda
Version : 2021.05-1
Description : Completely free enterprise-ready Python distribution for
large-scale data processing, predictive analytics, and scientific
computing.
Architecture : x86_64
URL : https://www.anaconda.com/
Licenses : BSD
Groups : None
Provides : None
Depends On : None
Optional Deps : None
Required By : None
Optional For : None
Conflicts With : None
Replaces : None
Installed Size : 3.18 GiB
Packager : Unknown Packager
Build Date : Fri 20 Aug 2021 03:39:39 AM CEST
Install Date : Fri 20 Aug 2021 04:01:35 AM CEST
Install Reason : Explicitly installed
Install Script : Yes
Validated By : None

git status
On branch master
Your branch is up to date with 'origin/master'.

nothing to commit, working tree clean

@x3oo
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x3oo commented Aug 20, 2021

git status
On branch master
Your branch is up to date with 'origin/master'.

nothing to commit, working tree clean

@x3oo
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x3oo commented Aug 20, 2021

vtk is supposedly missing but its explicitly listed in environment_linux.yml.
will check if its in conda after reinstall

@x3oo
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x3oo commented Aug 20, 2021

there seems to be a problem with my anaconda install, will try to fix
thank you

@x3oo
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x3oo commented Aug 20, 2021

(sharpy_env) [buttermelted@thinkpad sharpy]$ rm -rf build/
(sharpy_env) [buttermelted@thinkpad sharpy]$ mkdir build
(sharpy_env) [buttermelted@thinkpad sharpy]$ cd build/
(sharpy_env) [buttermelted@thinkpad build]$ cmake ..
-- The C compiler identification is GNU 11.1.0
-- The CXX compiler identification is GNU 11.1.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- The Fortran compiler identification is GNU 11.1.0
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Could NOT find MKL (missing: MKL_LIBRARIES MKL_INCLUDE_DIRS MKL_INTERFACE_LIBRARY MKL_SEQUENTIAL_LAYER_LIBRARY MKL_CORE_LIBRARY)
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - not found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Found BLAS: /usr/lib/libopenblas.so
-- Looking for Fortran cheev
-- Looking for Fortran cheev - not found
-- Looking for Fortran cheev
-- Looking for Fortran cheev - not found
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP_Fortran: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Could NOT find MKL (missing: MKL_LIBRARIES MKL_INCLUDE_DIRS MKL_INTERFACE_LIBRARY MKL_SEQUENTIAL_LAYER_LIBRARY MKL_CORE_LIBRARY)
-- A library with LAPACK API found.
-- Found OpenMP_C: -fopenmp
-- Found OpenMP_CXX: -fopenmp
-- Found OpenMP: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /home/buttermelted/bin/sharpy/build
(sharpy_env) [buttermelted@thinkpad build]$ make install -j 4
make[1]: Entering directory '/home/buttermelted/bin/sharpy/build'
make[2]: Entering directory '/home/buttermelted/bin/sharpy/build'
make[2]: Entering directory '/home/buttermelted/bin/sharpy/build'
Scanning dependencies of target uvlm
Scanning dependencies of target xbeam
make[2]: Leaving directory '/home/buttermelted/bin/sharpy/build'
make[2]: Entering directory '/home/buttermelted/bin/sharpy/build'
[ 3%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_shared.f90.o
[ 7%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_fem.f90.o
[ 11%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_sparse.f90.o
[ 15%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_rot.f90.o
make[2]: Leaving directory '/home/buttermelted/bin/sharpy/build'
make[2]: Entering directory '/home/buttermelted/bin/sharpy/build'
[ 19%] Building CXX object lib/UVLM/CMakeFiles/uvlm.dir/src/cpp_interface.cpp.o
[ 23%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_mat.f90.o
[ 26%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_solv.f90.o
[ 30%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_out.f90.o
[ 34%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/debug_utils.f90.o
[ 38%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_lu.f90.o
[ 42%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_rotvect.f90.o
[ 50%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_bgeom.f90.o
[ 50%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_cbeam3.f90.o
[ 53%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_xbeam.f90.o
[ 57%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_perturb.f90.o
[ 61%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_undef.f90.o
[ 65%] Linking CXX shared library libuvlm.so
make[2]: Leaving directory '/home/buttermelted/bin/sharpy/build'
[ 65%] Built target uvlm
[ 76%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/cbeam3_asbly.f90.o
[ 76%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_asbly.f90.o
[ 76%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_fdiff.f90.o
[ 80%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/cbeam3_solv.f90.o
[ 88%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/cbeam3_interface.f90.o
[ 88%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_solv.f90.o
[ 92%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_perturb.f90.o
[ 96%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_interface.f90.o
[100%] Linking Fortran shared library libxbeam.so
make[2]: Leaving directory '/home/buttermelted/bin/sharpy/build'
[100%] Built target xbeam
make[1]: Leaving directory '/home/buttermelted/bin/sharpy/build'
Install the project...
-- Install configuration: "Release"
-- Installing: /home/buttermelted/bin/sharpy/lib/xbeam/lib/libxbeam.so
-- Installing: /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so

@x3oo
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x3oo commented Aug 20, 2021

libstdc++.so.6 is really missing in those subdirectories, there must be dependecy conflicts in sharpy, i am using the master branch

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x3oo commented Aug 20, 2021

(sharpy_env) [buttermelted@thinkpad sharpy]$ conda update --all
Collecting package metadata (current_repodata.json): done
Solving environment: done

Package Plan

environment location: /home/buttermelted/.conda/envs/sharpy_env

The following packages will be downloaded:

package                    |            build
---------------------------|-----------------
recommonmark-0.6.0         |             py_0         174 KB
------------------------------------------------------------
                                       Total:         174 KB

The following NEW packages will be INSTALLED:

_openmp_mutex pkgs/main/linux-64::_openmp_mutex-4.5-1_gnu
anyio pkgs/main/linux-64::anyio-2.2.0-py37h06a4308_1
argon2-cffi pkgs/main/linux-64::argon2-cffi-20.1.0-py37h27cfd23_1
async_generator pkgs/main/linux-64::async_generator-1.10-py37h28b3542_0
blas pkgs/main/linux-64::blas-1.0-openblas
bottleneck pkgs/main/linux-64::bottleneck-1.3.2-py37heb32a55_1
brotli pkgs/main/linux-64::brotli-1.0.9-he6710b0_2
brotlipy pkgs/main/linux-64::brotlipy-0.7.0-py37h27cfd23_1003
c-ares pkgs/main/linux-64::c-ares-1.17.1-h27cfd23_0
fonttools pkgs/main/noarch::fonttools-4.25.0-pyhd3eb1b0_0
importlib-metadata pkgs/main/linux-64::importlib-metadata-3.10.0-py37h06a4308_0
jupyter_server pkgs/main/linux-64::jupyter_server-1.4.1-py37h06a4308_0
jupyterlab_pygmen~ pkgs/main/noarch::jupyterlab_pygments-0.1.2-py_0
lcms2 pkgs/main/linux-64::lcms2-2.12-h3be6417_0
ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.35.1-h7274673_9
libev pkgs/main/linux-64::libev-4.33-h7b6447c_0
libgfortran4 pkgs/main/linux-64::libgfortran4-7.5.0-ha8ba4b0_17
libgomp pkgs/main/linux-64::libgomp-9.3.0-h5101ec6_17
libnghttp2 pkgs/main/linux-64::libnghttp2-1.41.0-hf8bcb03_2
matplotlib-base pkgs/main/linux-64::matplotlib-base-3.4.2-py37hab158f2_0
matplotlib-inline pkgs/main/noarch::matplotlib-inline-0.1.2-pyhd3eb1b0_2
munkres pkgs/main/noarch::munkres-1.1.4-py_0
nbclassic pkgs/main/noarch::nbclassic-0.2.6-pyhd3eb1b0_0
nbclient pkgs/main/noarch::nbclient-0.5.3-pyhd3eb1b0_0
nest-asyncio pkgs/main/noarch::nest-asyncio-1.5.1-pyhd3eb1b0_0
numexpr pkgs/main/linux-64::numexpr-2.7.3-py37h4be448d_1
numpy-base pkgs/main/linux-64::numpy-base-1.20.3-py37h39b7dee_0
olefile pkgs/main/linux-64::olefile-0.46-py37_0
openjpeg pkgs/main/linux-64::openjpeg-2.3.0-h05c96fa_1
pillow pkgs/main/linux-64::pillow-8.3.1-py37h2c7a002_0
prompt-toolkit pkgs/main/noarch::prompt-toolkit-3.0.17-pyh06a4308_0
sniffio pkgs/main/linux-64::sniffio-1.2.0-py37h06a4308_1
typing_extensions pkgs/main/noarch::typing_extensions-3.10.0.0-pyh06a4308_0

The following packages will be UPDATED:

apptools pkgs/main/linux-64::apptools-4.4.0-py~ --> pkgs/main/noarch::apptools-5.1.0-pyhd3eb1b0_0
asn1crypto conda-forge/linux-64::asn1crypto-1.2.~ --> pkgs/main/noarch::asn1crypto-1.4.0-py_0
attrs conda-forge::attrs-19.3.0-py_0 --> pkgs/main::attrs-21.2.0-pyhd3eb1b0_0
babel conda-forge::babel-2.7.0-py_0 --> pkgs/main::babel-2.9.1-pyhd3eb1b0_0
backcall pkgs/main/linux-64::backcall-0.1.0-py~ --> pkgs/main/noarch::backcall-0.2.0-pyhd3eb1b0_0
bleach conda-forge::bleach-3.1.0-py_0 --> pkgs/main::bleach-4.0.0-pyhd3eb1b0_0
ca-certificates 2020.6.24-0 --> 2021.7.5-h06a4308_1
certifi 2020.6.20-py37_0 --> 2021.5.30-py37h06a4308_0
cffi 1.13.1-py37h2e261b9_0 --> 1.14.6-py37h400218f_0
chardet conda-forge::chardet-3.0.4-py37_1003 --> pkgs/main::chardet-4.0.0-py37h06a4308_1003
colorama pkgs/main/linux-64::colorama-0.4.1-py~ --> pkgs/main/noarch::colorama-0.4.4-pyhd3eb1b0_0
commonmark conda-forge::commonmark-0.9.0-py_0 --> pkgs/main::commonmark-0.9.1-py_0
cryptography 2.8-py37h1ba5d50_0 --> 3.4.7-py37hd23ed53_0
curl 7.67.0-hbc83047_0 --> 7.78.0-h1ccaba5_0
dbus 1.13.12-h746ee38_0 --> 1.13.18-hb2f20db_0
decorator conda-forge::decorator-4.4.1-py_0 --> pkgs/main::decorator-5.0.9-pyhd3eb1b0_0
defusedxml conda-forge::defusedxml-0.6.0-py_0 --> pkgs/main::defusedxml-0.7.1-pyhd3eb1b0_0
dill conda-forge/linux-64::dill-0.3.1.1-py~ --> pkgs/main/noarch::dill-0.3.4-pyhd3eb1b0_0
docutils conda-forge::docutils-0.15.2-py37_0 --> pkgs/main::docutils-0.17.1-py37h06a4308_1
envisage conda-forge::envisage-4.8.0-py_0 --> pkgs/main::envisage-6.0.1-pyhd3eb1b0_0
expat 2.2.6-he6710b0_0 --> 2.4.1-h2531618_2
fontconfig 2.13.0-h9420a91_0 --> 2.13.1-h6c09931_0
freetype 2.9.1-h8a8886c_1 --> 2.10.4-h5ab3b9f_0
future conda-forge::future-0.18.2-py37_0 --> pkgs/main::future-0.18.2-py37_1
glib 2.63.1-h5a9c865_0 --> 2.69.1-h5202010_0
gst-plugins-base 1.14.0-hbbd80ab_1 --> 1.14.0-h8213a91_2
gstreamer 1.14.0-hb453b48_1 --> 1.14.0-h28cd5cc_2
h5py conda-forge::h5py-2.9.0-nompi_py37hca~ --> pkgs/main::h5py-2.10.0-py37h7918eee_0
icu 58.2-h9c2bf20_1 --> 58.2-he6710b0_3
idna pkgs/main/linux-64::idna-2.8-py37_0 --> pkgs/main/noarch::idna-2.10-pyhd3eb1b0_0
imagesize pkgs/main/linux-64::imagesize-1.1.0-p~ --> pkgs/main/noarch::imagesize-1.2.0-pyhd3eb1b0_0
importlib_metadata conda-forge/linux-64::importlib_metad~ --> pkgs/main/noarch::importlib_metadata-3.10.0-hd3eb1b0_0
intel-openmp 2019.4-243 --> 2021.3.0-h06a4308_3350
ipykernel 5.1.3-py37h39e3cac_0 --> 5.3.4-py37h5ca1d4c_0
ipython 7.10.1-py37h39e3cac_0 --> 7.26.0-py37hb070fc8_0
jedi conda-forge::jedi-0.15.1-py37_0 --> pkgs/main::jedi-0.18.0-py37h06a4308_1
jinja2 conda-forge::jinja2-2.10.3-py_0 --> pkgs/main::jinja2-3.0.1-pyhd3eb1b0_0
json5 conda-forge::json5-0.8.5-py_0 --> pkgs/main::json5-0.9.6-pyhd3eb1b0_0
jsoncpp 1.8.4-hfd86e86_0 --> 1.9.4-hff7bd54_2
jsonschema conda-forge/linux-64::jsonschema-3.1.~ --> pkgs/main/noarch::jsonschema-3.2.0-py_2
jupyter_client conda-forge/linux-64::jupyter_client-~ --> pkgs/main/noarch::jupyter_client-6.1.12-pyhd3eb1b0_0
jupyter_core conda-forge/noarch::jupyter_core-4.5.~ --> pkgs/main/linux-64::jupyter_core-4.7.1-py37h06a4308_0
jupyterlab conda-forge::jupyterlab-1.2.3-py_0 --> pkgs/main::jupyterlab-3.1.7-pyhd3eb1b0_0
jupyterlab_server conda-forge::jupyterlab_server-1.0.6-~ --> pkgs/main::jupyterlab_server-2.7.1-pyhd3eb1b0_0
kiwisolver 1.1.0-py37he6710b0_0 --> 1.3.1-py37h2531618_0
krb5 1.16.1-h173b8e3_7 --> 1.19.2-hac12032_0
libcurl 7.67.0-h20c2e04_0 --> 7.78.0-h0b77cf5_0
libedit 3.1.20181209-hc058e9b_0 --> 3.1.20210216-h27cfd23_1
libffi 3.2.1-hd88cf55_4 --> 3.3-he6710b0_2
libgcc-ng 9.1.0-hdf63c60_0 --> 9.3.0-h5101ec6_17
libgfortran-ng 7.3.0-hdf63c60_0 --> 7.5.0-ha8ba4b0_17
libogg 1.3.2-h7b6447c_0 --> 1.3.5-h27cfd23_1
libsodium 1.0.16-h1bed415_0 --> 1.0.18-h7b6447c_0
libssh2 1.8.2-h1ba5d50_0 --> 1.9.0-h1ba5d50_1
libstdcxx-ng 9.1.0-hdf63c60_0 --> 9.3.0-hd4cf53a_17
libvorbis 1.3.6-h7b6447c_0 --> 1.3.7-h7b6447c_0
libxcb 1.13-h1bed415_1 --> 1.14-h7b6447c_0
libxml2 2.9.9-hea5a465_1 --> 2.9.12-h03d6c58_0
libxslt 1.1.33-h7d1a2b0_0 --> 1.1.34-hc22bd24_0
lxml 4.4.1-py37hefd8a0e_0 --> 4.6.3-py37h9120a33_0
markupsafe 1.1.1-py37h7b6447c_0 --> 2.0.1-py37h27cfd23_0
matplotlib 3.1.1-py37h5429711_0 --> 3.4.2-py37h06a4308_0
mistune conda-forge::mistune-0.8.4-py37h51690~ --> pkgs/main::mistune-0.8.4-py37h14c3975_1001
more-itertools conda-forge::more-itertools-7.2.0-py_0 --> pkgs/main::more-itertools-8.8.0-pyhd3eb1b0_0
nbconvert conda-forge::nbconvert-5.6.1-py37_0 --> pkgs/main::nbconvert-6.1.0-py37h06a4308_0
nbformat conda-forge::nbformat-4.4.0-py_1 --> pkgs/main::nbformat-5.1.3-pyhd3eb1b0_0
ncurses 6.1-he6710b0_1 --> 6.2-he6710b0_1
notebook conda-forge::notebook-6.0.1-py37_0 --> pkgs/main::notebook-6.4.3-py37h06a4308_0
numpy conda-forge::numpy-1.17.3-py37h95a140~ --> pkgs/main::numpy-1.20.3-py37h3dbb7de_0
openssl 1.1.1g-h7b6447c_0 --> 1.1.1k-h27cfd23_0
packaging conda-forge::packaging-19.2-py_0 --> pkgs/main::packaging-21.0-pyhd3eb1b0_0
pandas conda-forge::pandas-0.25.3-py37hb3f55~ --> pkgs/main::pandas-1.3.1-py37h8c16a72_0
pandoc conda-forge::pandoc-2.7.3-0 --> pkgs/main::pandoc-2.12-h06a4308_0
pandocfilters conda-forge/noarch::pandocfilters-1.4~ --> pkgs/main/linux-64::pandocfilters-1.4.3-py37h06a4308_1
parso conda-forge::parso-0.5.1-py_0 --> pkgs/main::parso-0.8.2-pyhd3eb1b0_0
pcre 8.43-he6710b0_0 --> 8.45-h295c915_0
pexpect conda-forge/linux-64::pexpect-4.7.0-p~ --> pkgs/main/noarch::pexpect-4.8.0-pyhd3eb1b0_3
pickleshare pkgs/main/linux-64::pickleshare-0.7.5~ --> pkgs/main/noarch::pickleshare-0.7.5-pyhd3eb1b0_1003
pip conda-forge::pip-19.3.1-py37_0 --> pkgs/main::pip-21.0.1-py37h06a4308_0
prometheus_client conda-forge::prometheus_client-0.7.1-~ --> pkgs/main::prometheus_client-0.11.0-pyhd3eb1b0_0
prompt_toolkit conda-forge::prompt_toolkit-3.0.2-py_0 --> pkgs/main::prompt_toolkit-3.0.17-hd3eb1b0_0
ptyprocess conda-forge/linux-64::ptyprocess-0.6.~ --> pkgs/main/noarch::ptyprocess-0.7.0-pyhd3eb1b0_2
pycparser pkgs/main/linux-64::pycparser-2.19-py~ --> pkgs/main/noarch::pycparser-2.20-py_2
pyface 6.1.2-py37_0 --> 7.3.0-py37h06a4308_1
pygments conda-forge::pygments-2.4.2-py_0 --> pkgs/main::pygments-2.10.0-pyhd3eb1b0_0
pyopenssl conda-forge/linux-64::pyopenssl-19.0.~ --> pkgs/main/noarch::pyopenssl-20.0.1-pyhd3eb1b0_1
pyparsing conda-forge::pyparsing-2.4.4-py_0 --> pkgs/main::pyparsing-2.4.7-pyhd3eb1b0_0
pyrsistent conda-forge::pyrsistent-0.15.5-py37h5~ --> pkgs/main::pyrsistent-0.17.3-py37h7b6447c_0
pysocks conda-forge::pysocks-1.7.1-py37_0 --> pkgs/main::pysocks-1.7.1-py37_1
python 3.7.5-h0371630_0 --> 3.7.11-h12debd9_0
python-dateutil conda-forge::python-dateutil-2.8.1-py~ --> pkgs/main::python-dateutil-2.8.2-pyhd3eb1b0_0
pytz conda-forge::pytz-2019.3-py_0 --> pkgs/main::pytz-2021.1-pyhd3eb1b0_0
pyyaml 5.1.2-py37h7b6447c_0 --> 5.4.1-py37h27cfd23_1
pyzmq 18.1.0-py37he6710b0_0 --> 22.2.1-py37h295c915_1
readline 7.0-h7b6447c_5 --> 8.1-h27cfd23_0
requests conda-forge/linux-64::requests-2.22.0~ --> pkgs/main/noarch::requests-2.25.1-pyhd3eb1b0_0
rhash 1.3.8-h1ba5d50_0 --> 1.4.1-h3c74f83_1
scipy conda-forge::scipy-1.3.2-py37h921218d~ --> pkgs/main::scipy-1.6.2-py37hf56f3a7_1
send2trash pkgs/main/linux-64::send2trash-1.5.0-~ --> pkgs/main/noarch::send2trash-1.5.0-pyhd3eb1b0_1
setuptools conda-forge::setuptools-41.6.0-py37_0 --> pkgs/main::setuptools-52.0.0-py37h06a4308_0
six conda-forge/linux-64::six-1.13.0-py37~ --> pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_0
snowballstemmer conda-forge::snowballstemmer-2.0.0-py~ --> pkgs/main::snowballstemmer-2.1.0-pyhd3eb1b0_0
sphinx conda-forge::sphinx-3.0.3-py_0 --> pkgs/main::sphinx-4.0.2-pyhd3eb1b0_0
sphinxcontrib-app~ conda-forge::sphinxcontrib-applehelp-~ --> pkgs/main::sphinxcontrib-applehelp-1.0.2-pyhd3eb1b0_0
sphinxcontrib-dev~ conda-forge::sphinxcontrib-devhelp-1.~ --> pkgs/main::sphinxcontrib-devhelp-1.0.2-pyhd3eb1b0_0
sphinxcontrib-htm~ conda-forge::sphinxcontrib-htmlhelp-1~ --> pkgs/main::sphinxcontrib-htmlhelp-2.0.0-pyhd3eb1b0_0
sphinxcontrib-qth~ conda-forge::sphinxcontrib-qthelp-1.0~ --> pkgs/main::sphinxcontrib-qthelp-1.0.3-pyhd3eb1b0_0
sphinxcontrib-ser~ conda-forge::sphinxcontrib-serializin~ --> pkgs/main::sphinxcontrib-serializinghtml-1.1.5-pyhd3eb1b0_0
sqlite 3.30.1-h7b6447c_0 --> 3.36.0-hc218d9a_0
tbb 2019.8-hfd86e86_0 --> 2021.3.0-hd09550d_0
terminado conda-forge::terminado-0.8.3-py37_0 --> pkgs/main::terminado-0.9.4-py37h06a4308_0
testpath conda-forge::testpath-0.4.4-py_0 --> pkgs/main::testpath-0.5.0-pyhd3eb1b0_0
tk 8.6.8-hbc83047_0 --> 8.6.10-hbc83047_0
tornado 6.0.3-py37h7b6447c_0 --> 6.1-py37h27cfd23_0
traitlets conda-forge/linux-64::traitlets-4.3.3~ --> pkgs/main/noarch::traitlets-5.0.5-pyhd3eb1b0_0
traits 5.2.0-py37h7b6447c_0 --> 6.2.0-py37h27cfd23_0
traitsui conda-forge::traitsui-6.1.3-py_0 --> pkgs/main::traitsui-7.2.1-pyhd3eb1b0_0
urllib3 conda-forge/linux-64::urllib3-1.24.2-~ --> pkgs/main/noarch::urllib3-1.26.6-pyhd3eb1b0_1
wcwidth pkgs/main/linux-64::wcwidth-0.1.7-py3~ --> pkgs/main/noarch::wcwidth-0.2.5-py_0
wheel conda-forge/linux-64::wheel-0.33.6-py~ --> pkgs/main/noarch::wheel-0.37.0-pyhd3eb1b0_0
xlrd pkgs/main/linux-64::xlrd-1.2.0-py37_0 --> pkgs/main/noarch::xlrd-2.0.1-pyhd3eb1b0_0
xz 5.2.4-h14c3975_4 --> 5.2.5-h7b6447c_0
yaml 0.1.7-had09818_2 --> 0.2.5-h7b6447c_0
zeromq 4.3.1-he6710b0_3 --> 4.3.4-h2531618_0
zipp conda-forge::zipp-0.6.0-py_0 --> pkgs/main::zipp-3.5.0-pyhd3eb1b0_0

The following packages will be SUPERSEDED by a higher-priority channel:

_libgcc_mutex conda-forge --> pkgs/main
entrypoints conda-forge::entrypoints-0.3-py37_1000 --> pkgs/main::entrypoints-0.3-py37_0
ipython_genutils conda-forge::ipython_genutils-0.2.0-p~ --> pkgs/main::ipython_genutils-0.2.0-pyhd3eb1b0_1
recommonmark conda-forge --> pkgs/main
sphinx_rtd_theme conda-forge::sphinx_rtd_theme-0.5.0-p~ --> pkgs/main::sphinx_rtd_theme-0.4.3-py_0
sphinxcontrib-jsm~ conda-forge::sphinxcontrib-jsmath-1.0~ --> pkgs/main::sphinxcontrib-jsmath-1.0.1-pyhd3eb1b0_0
webencodings conda-forge/noarch::webencodings-0.5.~ --> pkgs/main/linux-64::webencodings-0.5.1-py37_1

The following packages will be DOWNGRADED:

configobj 5.0.6-py37_1 --> 5.0.6-py37h06a4308_1

Proceed ([y]/n)?

Downloading and Extracting Packages
recommonmark-0.6.0 | 174 KB | ###################################################################################################### | 100%
imagesize-1.2.0 | 9 KB | ###################################################################################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(sharpy_env) [buttermelted@thinkpad sharpy]$ python -m unittest
running unittest
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)
running unittest
EEEE.EEEEEEEEEEEsE.EE./home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/h5py/_hl/dataset.py:541: DeprecationWarning: Passing None into shape arguments as an alias for () is deprecated.
arr = numpy.ndarray(selection.mshape, dtype=new_dtype)
...EE..........E.E

ERROR: sharpy.generators (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.generators
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/sharpy/generators/init.py", line 25, in
generator_interface.generators[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/generators/gridbox.py", line 6, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: sharpy.linear.assembler (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.linear.assembler
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/sharpy/linear/assembler/init.py", line 16, in
ss_interface.systems_dict_import[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/linear/assembler/linearbeam.py", line 7, in
import sharpy.linear.src.lingebm as lingebm
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/lingebm.py", line 15, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: sharpy.postproc (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.postproc
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/sharpy/postproc/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/postproc/aerogridplot.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: sharpy.solvers (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.solvers
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_doublependulum (tests.coupled.multibody.double_pendulum.test_double_pendulum_geradin.TestDoublePendulum)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/multibody/double_pendulum/test_double_pendulum_geradin.py", line 209, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_testfixnodevelocitywrta (tests.coupled.multibody.fix_node_velocity_wrtA.test_fix_node_velocity_wrtA.TestFixNodeVelocitywrtA)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/multibody/fix_node_velocity_wrtA/test_fix_node_velocity_wrtA.py", line 61, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_testfixnodevelocitywrtg (tests.coupled.multibody.fix_node_velocity_wrtG.test_fix_node_velocity_wrtG.TestFixNodeVelocitywrtG)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/multibody/fix_node_velocity_wrtG/test_fix_node_velocity_wrtG.py", line 63, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_rotor (tests.coupled.prescribed.WindTurbine.test_rotor.TestRotor)

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/prescribed/WindTurbine/test_rotor.py", line 82, in setUp
options)
File "/home/buttermelted/bin/sharpy/cases/templates/template_wt.py", line 183, in rotor_from_excel_type03
rR_structural = gc.read_column_sheet_type01(excel_file_name, excel_sheet_structural_blade, 'rR')
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 166, in read_column_sheet_type01
xls = pd.ExcelFile(excel_file_name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_base.py", line 1233, in init
self._reader = self._engines[engine](self._io, storage_options=storage_options)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_openpyxl.py", line 521, in init
import_optional_dependency("openpyxl")
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/compat/_optional.py", line 118, in import_optional_dependency
raise ImportError(msg) from None
ImportError: Missing optional dependency 'openpyxl'. Use pip or conda to install openpyxl.

======================================================================
ERROR: test_static_aoa (tests.coupled.static.test_pazy_static.TestPazyCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_pazy_static.py", line 33, in test_static_aoa
Msf=Msf)
File "/home/buttermelted/bin/sharpy/tests/coupled/static/pazy/generate_pazy.py", line 136, in generate_pazy
sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_smith2deg_g (tests.coupled.static.test_static.TestCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_static.py", line 65, in test_smith2deg_g
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_smith2deg_nog (tests.coupled.static.test_static.TestCoupledStatic)
Case and results from:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_static.py", line 40, in test_smith2deg_nog
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_smith4deg_g (tests.coupled.static.test_static.TestCoupledStatic)
Case from R. Simpson's PhD thesis.

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_static.py", line 85, in test_smith4deg_g
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_smith4deg_nog (tests.coupled.static.test_static.TestCoupledStatic)
Hodges result for Euler+Nonlinear is

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/coupled/static/test_static.py", line 115, in test_smith4deg_nog
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_dynamic_aoa (tests.io.test_pazy_udpout.TestPazyCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/io/test_pazy_udpout.py", line 32, in test_dynamic_aoa
cd=self.route_test_dir)
File "/home/buttermelted/bin/sharpy/tests/io/generate_pazy_udpout.py", line 338, in generate_pazy_udp
sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: tests.linear.assembly.test_assembly (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.assembly.test_assembly
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/tests/linear/assembly/test_assembly.py", line 15, in
import sharpy.linear.src.assembly as assembly
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/assembly.py", line 22, in
from sharpy.aero.utils.uvlmlib import dvinddzeta_cpp, eval_panel_cpp
File "/home/buttermelted/bin/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: tests.linear.derivatives.test_ders (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.derivatives.test_ders
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/tests/linear/derivatives/test_ders.py", line 9, in
import sharpy.aero.utils.uvlmlib
File "/home/buttermelted/bin/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_flutter (tests.linear.goland_wing.test_goland_flutter.TestGolandFlutter)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 285, in test_flutter
self.setup()
File "/home/buttermelted/bin/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 246, in setup
self.data = sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_flutter (tests.linear.goland_wing.test_goland_flutter.TestGolandFlutter)

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 293, in tearDown
shutil.rmtree(self.route_test_dir + '/' + folder)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/shutil.py", line 485, in rmtree
onerror(os.lstat, path, sys.exc_info())
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/shutil.py", line 483, in rmtree
orig_st = os.lstat(path)
FileNotFoundError: [Errno 2] No such file or directory: '/home/buttermelted/bin/sharpy/tests/linear/goland_wing/output'

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [Direct]

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [FrequencyLimited]

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [Iterative]

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: tests.linear.rom.test_springmasssystem (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.rom.test_springmasssystem
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/tests/linear/rom/test_springmasssystem.py", line 10, in
import sharpy.linear.src.lingebm as lingebm
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/lingebm.py", line 15, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: tests.linear.uvlm.test_infinite_span (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.uvlm.test_infinite_span
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin/sharpy/tests/linear/uvlm/test_infinite_span.py", line 19, in
import sharpy.linear.src.linuvlm as linuvlm
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/linuvlm.py", line 27, in
import sharpy.linear.src.multisurfaces as multisurfaces
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/multisurfaces.py", line 8, in
import sharpy.linear.src.surface as surface
File "/home/buttermelted/bin/sharpy/sharpy/linear/src/surface.py", line 10, in
import sharpy.aero.utils.uvlmlib as uvlmlib # SHARPy's main uvlm interface with cpp
File "/home/buttermelted/bin/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_generatecases (tests.utils.test_generate_cases.TestGenerateCases)

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/utils/test_generate_cases.py", line 81, in setUp
options)
File "/home/buttermelted/bin/sharpy/cases/templates/template_wt.py", line 183, in rotor_from_excel_type03
rR_structural = gc.read_column_sheet_type01(excel_file_name, excel_sheet_structural_blade, 'rR')
File "/home/buttermelted/bin/sharpy/sharpy/utils/generate_cases.py", line 166, in read_column_sheet_type01
xls = pd.ExcelFile(excel_file_name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_base.py", line 1233, in init
self._reader = self._engines[engine](self._io, storage_options=storage_options)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_openpyxl.py", line 521, in init
import_optional_dependency("openpyxl")
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/compat/_optional.py", line 118, in import_optional_dependency
raise ImportError(msg) from None
ImportError: Missing optional dependency 'openpyxl'. Use pip or conda to install openpyxl.

======================================================================
ERROR: test_geradin (tests.xbeam.test_xbeam.TestGeradinXbeam)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/tests/xbeam/test_xbeam.py", line 28, in test_geradin
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org


Ran 40 tests in 1.155s

FAILED (errors=25, skipped=1)

@x3oo
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x3oo commented Aug 20, 2021

trying rebuild sharpy after conda update

@x3oo
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x3oo commented Aug 20, 2021

so i updated conda with conda update -all, like you see above, then i tried to rebuild sharpy and i still get the same messages.
i think there are some kind of dependency conflicts in sharpy

@x3oo
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x3oo commented Aug 20, 2021

(sharpy_env) [buttermelted@thinkpad sharpy]$ sharpy
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/bin/sharpy", line 9, in
data = sharpy.sharpy_main.main(sys.argv)
File "/home/buttermelted/bin/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/bin/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

(sharpy_env) [buttermelted@thinkpad sharpy]$

@ArturoMS13
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Hi,

it is usually not a good idea to update the conda environment like that. Can you please try to remove it (conda env remove --name sharpy_env) and create it from scratch again?
After you do that, can you report the output of "conda list --show-channel-urls"?
Can you try to install the missing library as "conda install jsoncpp=1.8.4"

Best regards.

@x3oo
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x3oo commented Aug 22, 2021

(sharpy_env) [buttermelted@thinkpad sharpy]$ conda list --show-channel-urls

packages in environment at /home/buttermelted/.conda/envs/sharpy_env:

Name Version Build Channel

_libgcc_mutex 0.1 main conda-forge
alabaster 0.7.12 py37_0 defaults
apptools 4.4.0 py37_1 defaults
asn1crypto 1.2.0 py37_0 conda-forge
attrs 19.3.0 py_0 conda-forge
babel 2.7.0 py_0 conda-forge
backcall 0.1.0 py37_0 defaults
bleach 3.1.0 py_0 conda-forge
bzip2 1.0.8 h7b6447c_0 defaults
ca-certificates 2020.6.24 0 defaults
certifi 2020.6.20 py37_0 defaults
cffi 1.13.1 py37h2e261b9_0 defaults
chardet 3.0.4 py37_1003 conda-forge
cmake 3.14.0 h52cb24c_0 defaults
colorama 0.4.1 py37_0 defaults
commonmark 0.9.0 py_0 conda-forge
configobj 5.0.6 py37_1 defaults
cryptography 2.8 py37h1ba5d50_0 defaults
curl 7.67.0 hbc83047_0 defaults
cycler 0.10.0 py37_0 defaults
dbus 1.13.12 h746ee38_0 defaults
decorator 4.4.1 py_0 conda-forge
defusedxml 0.6.0 py_0 conda-forge
dill 0.3.1.1 py37_0 conda-forge
docutils 0.15.2 py37_0 conda-forge
eigen 3.3.7 hfd86e86_0 defaults
entrypoints 0.3 py37_1000 conda-forge
envisage 4.8.0 py_0 conda-forge
expat 2.2.6 he6710b0_0 defaults
fontconfig 2.13.0 h9420a91_0 defaults
freetype 2.9.1 h8a8886c_1 defaults
future 0.18.2 py37_0 conda-forge
glib 2.63.1 h5a9c865_0 defaults
gst-plugins-base 1.14.0 hbbd80ab_1 defaults
gstreamer 1.14.0 hb453b48_1 defaults
h5py 2.9.0 nompi_py37hcafd542_1103 conda-forge
hdf4 4.2.13 h3ca952b_2 defaults
hdf5 1.10.4 hb1b8bf9_0 defaults
icu 58.2 h9c2bf20_1 defaults
idna 2.8 py37_0 defaults
imagesize 1.1.0 py37_0 defaults
importlib_metadata 0.23 py37_0 conda-forge
intel-openmp 2019.4 243 defaults
ipykernel 5.1.3 py37h39e3cac_0 defaults
ipython 7.10.1 py37h39e3cac_0 defaults
ipython_genutils 0.2.0 py_1 conda-forge
jedi 0.15.1 py37_0 conda-forge
jinja2 2.10.3 py_0 conda-forge
jpeg 9b h024ee3a_2 defaults
json5 0.8.5 py_0 conda-forge
jsoncpp 1.8.4 hfd86e86_0 defaults
jsonschema 3.1.1 py37_0 conda-forge
jupyter_client 5.3.3 py37_1 conda-forge
jupyter_core 4.5.0 py_0 conda-forge
jupyterlab 1.2.3 py_0 conda-forge
jupyterlab_server 1.0.6 py_0 conda-forge
kiwisolver 1.1.0 py37he6710b0_0 defaults
krb5 1.16.1 h173b8e3_7 defaults
lapack 3.6.1 ha44fe06_2 conda-forge
libblas 3.8.0 14_openblas conda-forge
libcblas 3.8.0 14_openblas conda-forge
libcurl 7.67.0 h20c2e04_0 defaults
libedit 3.1.20181209 hc058e9b_0 defaults
libffi 3.2.1 hd88cf55_4 defaults
libgcc-ng 9.1.0 hdf63c60_0 defaults
libgfortran 3.0.0 1 conda-forge
libgfortran-ng 7.3.0 hdf63c60_0 defaults
liblapack 3.8.0 14_openblas conda-forge
libnetcdf 4.6.1 h11d0813_2 defaults
libogg 1.3.2 h7b6447c_0 defaults
libopenblas 0.3.7 h5ec1e0e_4 conda-forge
libpng 1.6.37 hbc83047_0 defaults
libsodium 1.0.16 h1bed415_0 defaults
libssh2 1.8.2 h1ba5d50_0 defaults
libstdcxx-ng 9.1.0 hdf63c60_0 defaults
libtheora 1.1.1 h5ab3b9f_1 defaults
libtiff 4.1.0 h2733197_0 defaults
libuuid 1.0.3 h1bed415_2 defaults
libvorbis 1.3.6 h7b6447c_0 defaults
libxcb 1.13 h1bed415_1 defaults
libxml2 2.9.9 hea5a465_1 defaults
libxslt 1.1.33 h7d1a2b0_0 defaults
lxml 4.4.1 py37hefd8a0e_0 defaults
lz4-c 1.8.1.2 h14c3975_0 defaults
markupsafe 1.1.1 py37h7b6447c_0 defaults
matplotlib 3.1.1 py37h5429711_0 defaults
mayavi 4.7.1 py37h94891b3_2 defaults
mistune 0.8.4 py37h516909a_1000 conda-forge
more-itertools 7.2.0 py_0 conda-forge
nbconvert 5.6.1 py37_0 conda-forge
nbformat 4.4.0 py_1 conda-forge
nbsphinx 0.4.3 py_0 conda-forge
ncurses 6.1 he6710b0_1 defaults
notebook 6.0.1 py37_0 conda-forge
numpy 1.17.3 py37h95a1406_0 conda-forge
openssl 1.1.1g h7b6447c_0 defaults
packaging 19.2 py_0 conda-forge
pandas 0.25.3 py37hb3f55d8_0 conda-forge
pandoc 2.7.3 0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
parso 0.5.1 py_0 conda-forge
pcre 8.43 he6710b0_0 defaults
pexpect 4.7.0 py37_0 conda-forge
pickleshare 0.7.5 py37_0 defaults
pip 19.3.1 py37_0 conda-forge
prometheus_client 0.7.1 py_0 conda-forge
prompt_toolkit 3.0.2 py_0 conda-forge
ptyprocess 0.6.0 py37_0 conda-forge
pycparser 2.19 py37_0 defaults
pyface 6.1.2 py37_0 defaults
pygments 2.4.2 py_0 conda-forge
pyopenssl 19.0.0 py37_0 conda-forge
pyparsing 2.4.4 py_0 conda-forge
pyqt 5.9.2 py37h05f1152_2 defaults
pyrsistent 0.15.5 py37h516909a_0 conda-forge
pysocks 1.7.1 py37_0 conda-forge
python 3.7.5 h0371630_0 defaults
python-dateutil 2.8.1 py_0 conda-forge
pytz 2019.3 py_0 conda-forge
pyyaml 5.1.2 py37h7b6447c_0 defaults
pyzmq 18.1.0 py37he6710b0_0 defaults
qt 5.9.7 h5867ecd_1 defaults
readline 7.0 h7b6447c_5 defaults
recommonmark 0.6.0 py_0 conda-forge
requests 2.22.0 py37_0 conda-forge
rhash 1.3.8 h1ba5d50_0 defaults
scipy 1.3.2 py37h921218d_0 conda-forge
send2trash 1.5.0 py37_0 defaults
setuptools 41.6.0 py37_0 conda-forge
sip 4.19.8 py37hf484d3e_0 defaults
six 1.13.0 py37_0 conda-forge
snowballstemmer 2.0.0 py_0 conda-forge
sphinx 3.0.3 py_0 conda-forge
sphinx_rtd_theme 0.5.0 pyh9f0ad1d_0 conda-forge
sphinxcontrib-applehelp 1.0.1 py_0 conda-forge
sphinxcontrib-devhelp 1.0.1 py_0 conda-forge
sphinxcontrib-htmlhelp 1.0.2 py_0 conda-forge
sphinxcontrib-jsmath 1.0.1 py_0 conda-forge
sphinxcontrib-qthelp 1.0.2 py_0 conda-forge
sphinxcontrib-serializinghtml 1.1.3 py_0 conda-forge
sqlite 3.30.1 h7b6447c_0 defaults
tbb 2019.8 hfd86e86_0 defaults
terminado 0.8.3 py37_0 conda-forge
testpath 0.4.4 py_0 conda-forge
tk 8.6.8 hbc83047_0 defaults
tornado 6.0.3 py37h7b6447c_0 defaults
traitlets 4.3.3 py37_0 conda-forge
traits 5.2.0 py37h7b6447c_0 defaults
traitsui 6.1.3 py_0 conda-forge
urllib3 1.24.2 py37_0 conda-forge
vtk 8.2.0 py37haa4764d_200 defaults
wcwidth 0.1.7 py37_0 defaults
webencodings 0.5.1 py_1 conda-forge
wheel 0.33.6 py37_0 conda-forge
xlrd 1.2.0 py37_0 defaults
xz 5.2.4 h14c3975_4 defaults
yaml 0.1.7 had09818_2 defaults
zeromq 4.3.1 he6710b0_3 defaults
zipp 0.6.0 py_0 conda-forge
zlib 1.2.11 h7b6447c_3 defaults
zstd 1.3.7 h0b5b093_0 defaults

@x3oo
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x3oo commented Aug 22, 2021

(sharpy_env) [buttermelted@thinkpad sharpy]$ conda install jsoncpp=1.8.4
Collecting package metadata (current_repodata.json): done
Solving environment: done

Package Plan

environment location: /home/buttermelted/.conda/envs/sharpy_env

added / updated specs:
- jsoncpp=1.8.4

The following packages will be UPDATED:

ca-certificates 2020.6.24-0 --> 2021.7.5-h06a4308_1
certifi 2020.6.20-py37_0 --> 2021.5.30-py37h06a4308_0
openssl 1.1.1g-h7b6447c_0 --> 1.1.1k-h27cfd23_0

Proceed ([y]/n)?

Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(sharpy_env) [buttermelted@thinkpad sharpy]$ python -m unittest
Traceback (most recent call last):
File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so) running unittest Traceback (most recent call last): File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so)
running unittest
EEE.Traceback (most recent call last):
File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so) ETraceback (most recent call last): File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so)
ETraceback (most recent call last):
File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so)
E/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:266: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead.
for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator():
/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:312: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead.
for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator():
^CTraceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/runpy.py", line 193, in _run_module_as_main
"main", mod_spec)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/main.py", line 18, in
main(module=None)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/main.py", line 101, in init
self.runTests()
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/main.py", line 271, in runTests
self.result = testRunner.run(self.test)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/runner.py", line 176, in run
test(result)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/suite.py", line 84, in call
return self.run(*args, **kwds)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/suite.py", line 122, in run
test(result)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/suite.py", line 84, in call
return self.run(*args, **kwds)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/suite.py", line 122, in run
test(result)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/suite.py", line 84, in call
return self.run(*args, **kwds)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/suite.py", line 122, in run
test(result)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/case.py", line 676, in call
return self.run(*args, **kwds)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/case.py", line 624, in run
self.setUp()
File "/home/buttermelted/sharpy/tests/coupled/prescribed/WindTurbine/test_rotor.py", line 82, in setUp
options)
File "/home/buttermelted/sharpy/cases/templates/template_wt.py", line 188, in rotor_from_excel_type03
BMassDen = gc.read_column_sheet_type01(excel_file_name, excel_sheet_structural_blade, 'BMassDen')
File "/home/buttermelted/sharpy/sharpy/utils/generate_cases.py", line 166, in read_column_sheet_type01
xls = pd.ExcelFile(excel_file_name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_base.py", line 819, in init
self._reader = self._enginesengine
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_xlrd.py", line 21, in init
super().init(filepath_or_buffer)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_base.py", line 359, in init
self.book = self.load_workbook(filepath_or_buffer)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_xlrd.py", line 36, in load_workbook
return open_workbook(filepath_or_buffer)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/xlrd/init.py", line 138, in open_workbook
ragged_rows=ragged_rows,
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py", line 841, in open_workbook_2007_xml
x12sheet.process_stream(zflo, heading)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py", line 548, in own_process_stream
for event, elem in ET.iterparse(stream):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/xml/etree/ElementTree.py", line 1227, in iterator
pullparser.feed(data)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/xml/etree/ElementTree.py", line 1269, in feed
self._parser.feed(data)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/xml/etree/ElementTree.py", line 1630, in feed
self.parser.Parse(data, 0)
File "/tmp/build/80754af9/python_1572016129546/work/Modules/pyexpat.c", line 471, in EndElement
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/xml/etree/ElementTree.py", line 1514, in handler
append((event, end(tag)))
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/xml/etree/ElementTree.py", line 1557, in _end
return self.target.end(self._fixname(tag))
KeyboardInterrupt
(sharpy_env) [buttermelted@thinkpad sharpy]$

@x3oo
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x3oo commented Aug 22, 2021

(sharpy_env) [buttermelted@thinkpad sharpy]$ git pull
warning: redirecting to https://github.com/ImperialCollegeLondon/sharpy/
Already up to date.
(sharpy_env) [buttermelted@thinkpad sharpy]$ git submodule update --init --recursive
(sharpy_env) [buttermelted@thinkpad sharpy]$ python -m unittest
running unittest
Traceback (most recent call last):
File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so)
running unittest
EEEE.EEEEEEEEEEEsE.EE./home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/h5py/_hl/dataset.py:541: DeprecationWarning: Passing None into shape arguments as an alias for () is deprecated.
arr = numpy.ndarray(selection.mshape, dtype=new_dtype)
...EE..........E.E

ERROR: sharpy.generators (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.generators
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/sharpy/sharpy/generators/init.py", line 25, in
generator_interface.generators[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/generators/gridbox.py", line 6, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: sharpy.linear.assembler (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.linear.assembler
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/sharpy/sharpy/linear/assembler/init.py", line 16, in
ss_interface.systems_dict_import[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/linear/assembler/linearbeam.py", line 7, in
import sharpy.linear.src.lingebm as lingebm
File "/home/buttermelted/sharpy/sharpy/linear/src/lingebm.py", line 15, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: sharpy.postproc (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.postproc
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/sharpy/sharpy/postproc/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/postproc/aerogridplot.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: sharpy.solvers (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.solvers
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_doublependulum (tests.coupled.multibody.double_pendulum.test_double_pendulum_geradin.TestDoublePendulum)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/coupled/multibody/double_pendulum/test_double_pendulum_geradin.py", line 209, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_testfixnodevelocitywrta (tests.coupled.multibody.fix_node_velocity_wrtA.test_fix_node_velocity_wrtA.TestFixNodeVelocitywrtA)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/coupled/multibody/fix_node_velocity_wrtA/test_fix_node_velocity_wrtA.py", line 61, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_testfixnodevelocitywrtg (tests.coupled.multibody.fix_node_velocity_wrtG.test_fix_node_velocity_wrtG.TestFixNodeVelocitywrtG)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/coupled/multibody/fix_node_velocity_wrtG/test_fix_node_velocity_wrtG.py", line 63, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_rotor (tests.coupled.prescribed.WindTurbine.test_rotor.TestRotor)

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/coupled/prescribed/WindTurbine/test_rotor.py", line 82, in setUp
options)
File "/home/buttermelted/sharpy/cases/templates/template_wt.py", line 183, in rotor_from_excel_type03
rR_structural = gc.read_column_sheet_type01(excel_file_name, excel_sheet_structural_blade, 'rR')
File "/home/buttermelted/sharpy/sharpy/utils/generate_cases.py", line 166, in read_column_sheet_type01
xls = pd.ExcelFile(excel_file_name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_base.py", line 1233, in init
self._reader = self._engines[engine](self._io, storage_options=storage_options)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_openpyxl.py", line 521, in init
import_optional_dependency("openpyxl")
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/compat/_optional.py", line 118, in import_optional_dependency
raise ImportError(msg) from None
ImportError: Missing optional dependency 'openpyxl'. Use pip or conda to install openpyxl.

======================================================================
ERROR: test_static_aoa (tests.coupled.static.test_pazy_static.TestPazyCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/coupled/static/test_pazy_static.py", line 33, in test_static_aoa
Msf=Msf)
File "/home/buttermelted/sharpy/tests/coupled/static/pazy/generate_pazy.py", line 136, in generate_pazy
sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_smith2deg_g (tests.coupled.static.test_static.TestCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/coupled/static/test_static.py", line 65, in test_smith2deg_g
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_smith2deg_nog (tests.coupled.static.test_static.TestCoupledStatic)
Case and results from:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/coupled/static/test_static.py", line 40, in test_smith2deg_nog
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_smith4deg_g (tests.coupled.static.test_static.TestCoupledStatic)
Case from R. Simpson's PhD thesis.

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/coupled/static/test_static.py", line 85, in test_smith4deg_g
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_smith4deg_nog (tests.coupled.static.test_static.TestCoupledStatic)
Hodges result for Euler+Nonlinear is

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/coupled/static/test_static.py", line 115, in test_smith4deg_nog
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_dynamic_aoa (tests.io.test_pazy_udpout.TestPazyCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/io/test_pazy_udpout.py", line 32, in test_dynamic_aoa
cd=self.route_test_dir)
File "/home/buttermelted/sharpy/tests/io/generate_pazy_udpout.py", line 338, in generate_pazy_udp
sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: tests.linear.assembly.test_assembly (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.assembly.test_assembly
Traceback (most recent call last):
File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/sharpy/tests/linear/assembly/test_assembly.py", line 15, in
import sharpy.linear.src.assembly as assembly
File "/home/buttermelted/sharpy/sharpy/linear/src/assembly.py", line 22, in
from sharpy.aero.utils.uvlmlib import dvinddzeta_cpp, eval_panel_cpp
File "/home/buttermelted/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: tests.linear.derivatives.test_ders (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.derivatives.test_ders
Traceback (most recent call last):
File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/sharpy/tests/linear/derivatives/test_ders.py", line 9, in
import sharpy.aero.utils.uvlmlib
File "/home/buttermelted/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_flutter (tests.linear.goland_wing.test_goland_flutter.TestGolandFlutter)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 285, in test_flutter
self.setup()
File "/home/buttermelted/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 246, in setup
self.data = sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_flutter (tests.linear.goland_wing.test_goland_flutter.TestGolandFlutter)

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 293, in tearDown
shutil.rmtree(self.route_test_dir + '/' + folder)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/shutil.py", line 485, in rmtree
onerror(os.lstat, path, sys.exc_info())
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/shutil.py", line 483, in rmtree
orig_st = os.lstat(path)
FileNotFoundError: [Errno 2] No such file or directory: '/home/buttermelted/sharpy/tests/linear/goland_wing/output'

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [Direct]

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [FrequencyLimited]

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [Iterative]

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: tests.linear.rom.test_springmasssystem (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.rom.test_springmasssystem
Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/sharpy/tests/linear/rom/test_springmasssystem.py", line 10, in
import sharpy.linear.src.lingebm as lingebm
File "/home/buttermelted/sharpy/sharpy/linear/src/lingebm.py", line 15, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org

======================================================================
ERROR: tests.linear.uvlm.test_infinite_span (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.uvlm.test_infinite_span
Traceback (most recent call last):
File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/sharpy/tests/linear/uvlm/test_infinite_span.py", line 19, in
import sharpy.linear.src.linuvlm as linuvlm
File "/home/buttermelted/sharpy/sharpy/linear/src/linuvlm.py", line 27, in
import sharpy.linear.src.multisurfaces as multisurfaces
File "/home/buttermelted/sharpy/sharpy/linear/src/multisurfaces.py", line 8, in
import sharpy.linear.src.surface as surface
File "/home/buttermelted/sharpy/sharpy/linear/src/surface.py", line 10, in
import sharpy.aero.utils.uvlmlib as uvlmlib # SHARPy's main uvlm interface with cpp
File "/home/buttermelted/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_generatecases (tests.utils.test_generate_cases.TestGenerateCases)

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/utils/test_generate_cases.py", line 81, in setUp
options)
File "/home/buttermelted/sharpy/cases/templates/template_wt.py", line 183, in rotor_from_excel_type03
rR_structural = gc.read_column_sheet_type01(excel_file_name, excel_sheet_structural_blade, 'rR')
File "/home/buttermelted/sharpy/sharpy/utils/generate_cases.py", line 166, in read_column_sheet_type01
xls = pd.ExcelFile(excel_file_name)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_base.py", line 1233, in init
self._reader = self._engines[engine](self._io, storage_options=storage_options)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_openpyxl.py", line 521, in init
import_optional_dependency("openpyxl")
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/pandas/compat/_optional.py", line 118, in import_optional_dependency
raise ImportError(msg) from None
ImportError: Missing optional dependency 'openpyxl'. Use pip or conda to install openpyxl.

======================================================================
ERROR: test_geradin (tests.xbeam.test_xbeam.TestGeradinXbeam)

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 5, in
from .vtkIOParallelPython import *
ImportError: libjsoncpp.so.19: cannot open shared object file: No such file or directory

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 38, in
import vtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtk.py", line 32, in
all_spec.loader.exec_module(all_m)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/all.py", line 83, in
from .vtkIOParallel import *
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/vtkmodules/vtkIOParallel.py", line 9, in
from vtkIOParallelPython import *
ModuleNotFoundError: No module named 'vtkIOParallelPython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/sharpy/tests/xbeam/test_xbeam.py", line 28, in test_geradin
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/sharpy/sharpy/solvers/modal.py", line 12, in
import sharpy.structure.utils.modalutils as modalutils
File "/home/buttermelted/sharpy/sharpy/structure/utils/modalutils.py", line 4, in
from tvtk.api import tvtk, write_data
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/api.py", line 10, in
from tvtk.tvtk_access import tvtk
File "/home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/tvtk/tvtk_access.py", line 43, in
raise ImportError(msg)
ImportError: No module named 'vtkIOParallelPython'


Do you have vtk installed properly?
VTK (and build instructions) can be obtained from http://www.vtk.org


Ran 40 tests in 2.014s

FAILED (errors=25, skipped=1)
(sharpy_env) [buttermelted@thinkpad sharpy]$ i

@x3oo
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x3oo commented Aug 22, 2021

tried installing mkl and suddenly cmake is spewing warnings:
(sharpy_env) [buttermelted@thinkpad build]$ cd ..
(sharpy_env) [buttermelted@thinkpad sharpy]$ cmake
Usage

cmake [options]
cmake [options]
cmake [options] -S -B

Specify a source directory to (re-)generate a build system for it in the
current working directory. Specify an existing build directory to
re-generate its build system.

Run 'cmake --help' for more information.

(sharpy_env) [buttermelted@thinkpad sharpy]$ cmake .
-- The C compiler identification is GNU 11.1.0
-- The CXX compiler identification is GNU 11.1.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- The Fortran compiler identification is GNU 11.1.0
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Could NOT find MKL (missing: MKL_LIBRARIES MKL_INCLUDE_DIRS MKL_INTERFACE_LIBRARY MKL_SEQUENTIAL_LAYER_LIBRARY MKL_CORE_LIBRARY)
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - not found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Looking for Fortran sgemm
-- Looking for Fortran sgemm - found
-- Found BLAS: /usr/lib/libopenblas.so
-- Looking for Fortran cheev
-- Looking for Fortran cheev - not found
-- Looking for Fortran cheev
-- Looking for Fortran cheev - not found
-- Looking for Fortran cheev
-- Looking for Fortran cheev - found
-- A library with LAPACK API found.
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP_Fortran: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Could NOT find MKL (missing: MKL_LIBRARIES MKL_INCLUDE_DIRS MKL_INTERFACE_LIBRARY MKL_SEQUENTIAL_LAYER_LIBRARY MKL_CORE_LIBRARY)
-- A library with LAPACK API found.
-- Found OpenMP_C: -fopenmp
-- Found OpenMP_CXX: -fopenmp
-- Found OpenMP: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /home/buttermelted/sharpy
(sharpy_env) [buttermelted@thinkpad sharpy]$ conda install -c anaconda mkl
Collecting package metadata (current_repodata.json): done
Solving environment: done

Package Plan

environment location: /home/buttermelted/.conda/envs/sharpy_env

added / updated specs:
- mkl

The following packages will be downloaded:

package                    |            build
---------------------------|-----------------
certifi-2020.6.20          |           py37_0         159 KB  anaconda
------------------------------------------------------------
                                       Total:         159 KB

The following NEW packages will be INSTALLED:

mkl anaconda/linux-64::mkl-2020.2-256

The following packages will be SUPERSEDED by a higher-priority channel:

ca-certificates pkgs/main::ca-certificates-2021.7.5-h~ --> anaconda::ca-certificates-2020.10.14-0
certifi pkgs/main::certifi-2021.5.30-py37h06a~ --> anaconda::certifi-2020.6.20-py37_0

Proceed ([y]/n)?

Downloading and Extracting Packages
certifi-2020.6.20 | 159 KB | ######################################## | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(sharpy_env) [buttermelted@thinkpad sharpy]$ cmake .
-- Could NOT find MKL (missing: MKL_LIBRARIES MKL_INCLUDE_DIRS MKL_INTERFACE_LIBRARY MKL_SEQUENTIAL_LAYER_LIBRARY MKL_CORE_LIBRARY)
-- Looking for Fortran sgemm
CMake Warning at /home/buttermelted/sharpy/CMakeFiles/CMakeTmp/CMakeLists.txt:16 (add_executable):
Cannot generate a safe runtime search path for target cmTC_af322 because
files in some directories may conflict with libraries in implicit
directories:

runtime library [libgomp.so.1] in /usr/lib may be hidden by files in:
  /home/buttermelted/.conda/envs/sharpy_env/lib

Some of these libraries may not be found correctly.

-- Looking for Fortran sgemm - found
-- Found BLAS: /home/buttermelted/.conda/envs/sharpy_env/lib/libmkl_gf_lp64.so;/home/buttermelted/.conda/envs/sharpy_env/lib/libmkl_gnu_thread.so;/home/buttermelted/.conda/envs/sharpy_env/lib/libmkl_core.so;/usr/lib/libgomp.so;-lpthread;-lm;-ldl
-- A library with LAPACK API found.
-- Found OpenMP_Fortran: -fopenmp
-- Found OpenMP: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /home/buttermelted/.conda/envs/sharpy_env/lib/libmkl_intel_lp64.so;/home/buttermelted/.conda/envs/sharpy_env/lib/libmkl_intel_thread.so;/home/buttermelted/.conda/envs/sharpy_env/lib/libmkl_core.so;/home/buttermelted/.conda/envs/sharpy_env/lib/libiomp5.so;-lpthread;-lm;-ldl
-- Could NOT find MKL (missing: MKL_LIBRARIES MKL_INCLUDE_DIRS MKL_INTERFACE_LIBRARY MKL_SEQUENTIAL_LAYER_LIBRARY MKL_CORE_LIBRARY)
-- A library with LAPACK API found.
-- Found OpenMP: TRUE
-- Configuring done
CMake Warning at lib/xbeam/CMakeLists.txt:12 (add_library):
Cannot generate a safe runtime search path for target xbeam because files
in some directories may conflict with libraries in implicit directories:

runtime library [libgomp.so.1] in /usr/lib may be hidden by files in:
  /home/buttermelted/.conda/envs/sharpy_env/lib
runtime library [liblapack.so.3] in /usr/lib may be hidden by files in:
  /home/buttermelted/.conda/envs/sharpy_env/lib

Some of these libraries may not be found correctly.

CMake Warning at lib/UVLM/CMakeLists.txt:11 (add_library):
Cannot generate a safe runtime search path for target uvlm because files in
some directories may conflict with libraries in implicit directories:

runtime library [liblapack.so.3] in /usr/lib may be hidden by files in:
  /home/buttermelted/.conda/envs/sharpy_env/lib
runtime library [libgomp.so.1] in /usr/lib may be hidden by files in:
  /home/buttermelted/.conda/envs/sharpy_env/lib

Some of these libraries may not be found correctly.

-- Generating done
-- Build files have been written to: /home/buttermelted/sharpy
(sharpy_env) [buttermelted@thinkpad sharpy]$

@ArturoMS13
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ArturoMS13 commented Aug 22, 2021

Dear x3oo,

  • About the last comment: you are not compiling sharpy in the right folder. You should run "cmake .." when you are in the "build" folder. I do not think you should worry about the sharpy installation, it seems to be alright. You have a problem with conda.
  • Everytime you update the conda environment, I advise you to deactivate it and activate it again. Otherwise, you are at risk of not seeing the changes.
  • Please, you do not need to paste here the whole error message. Just extract the important information.
  • I cannot reproduce your error so it is difficult for me to give you any advice. I found this online "Not finding vtkIOParallelPython in Python3.6 build linux-64 conda-forge/vtk-feedstock#46" that you might want to try. However, I use the same channels as you do and it works.
  • If nothing works you can always try to install sharpy on another machine or in a virtual one.

Best regards, Arturo.

@x3oo
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x3oo commented Aug 22, 2021

sharpy_env) [buttermelted@thinkpad build]$ cmake ..
-- Could NOT find MKL (missing: MKL_LIBRARIES MKL_INCLUDE_DIRS MKL_INTERFACE_LIBRARY MKL_SEQUENTIAL_LAYER_LIBRARY MKL_CORE_LIBRARY)
-- Found BLAS: /home/buttermelted/.conda/envs/sharpy_env/lib/libmkl_gf_lp64.so;/home/buttermelted/.conda/envs/sharpy_env/lib/libmkl_gnu_thread.so;/home/buttermelted/.conda/envs/sharpy_env/lib/libmkl_core.so;/usr/lib/libgomp.so;-lpthread;-lm;-ldl
-- A library with LAPACK API found.
-- Found OpenMP: TRUE
-- Found BLAS: /home/buttermelted/.conda/envs/sharpy_env/lib/libmkl_intel_lp64.so;/home/buttermelted/.conda/envs/sharpy_env/lib/libmkl_intel_thread.so;/home/buttermelted/.conda/envs/sharpy_env/lib/libmkl_core.so;/home/buttermelted/.conda/envs/sharpy_env/lib/libiomp5.so;-lpthread;-lm;-ldl
-- Could NOT find MKL (missing: MKL_LIBRARIES MKL_INCLUDE_DIRS MKL_INTERFACE_LIBRARY MKL_SEQUENTIAL_LAYER_LIBRARY MKL_CORE_LIBRARY)
-- A library with LAPACK API found.
-- Found OpenMP: TRUE
-- Configuring done
CMake Warning at lib/xbeam/CMakeLists.txt:12 (add_library):
Cannot generate a safe runtime search path for target xbeam because files
in some directories may conflict with libraries in implicit directories:

runtime library [libgomp.so.1] in /usr/lib may be hidden by files in:
  /home/buttermelted/.conda/envs/sharpy_env/lib
runtime library [liblapack.so.3] in /usr/lib may be hidden by files in:
  /home/buttermelted/.conda/envs/sharpy_env/lib

Some of these libraries may not be found correctly.

CMake Warning at lib/UVLM/CMakeLists.txt:11 (add_library):
Cannot generate a safe runtime search path for target uvlm because files in
some directories may conflict with libraries in implicit directories:

runtime library [liblapack.so.3] in /usr/lib may be hidden by files in:
  /home/buttermelted/.conda/envs/sharpy_env/lib
runtime library [libgomp.so.1] in /usr/lib may be hidden by files in:
  /home/buttermelted/.conda/envs/sharpy_env/lib

Some of these libraries may not be found correctly.

-- Generating done
-- Build files have been written to: /home/buttermelted/sharpy
(sharpy_env) [buttermelted@thinkpad build]$

@x3oo
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x3oo commented Aug 22, 2021

OSError: /home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call

@x3oo
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x3oo commented Aug 22, 2021

(base) [buttermelted@thinkpad ~]$ find .conda/envs/sharpy_env/ -name libstdc++.so.6
.conda/envs/sharpy_env/lib/libstdc++.so.6

@x3oo
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x3oo commented Aug 22, 2021

thank you for your help, this is getting exhaustive, i will try to install anaconda manually

@x3oo
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x3oo commented Aug 22, 2021

tried rebuilding anaconda myself.
i get the same warnings

@x3oo
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x3oo commented Aug 22, 2021

(sharpy_env) [buttermelted@thinkpad sharpy]$ python -m unittest
running unittest
Traceback (most recent call last):
File "/home/buttermelted/bin/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):

now it does look like a mistake in conda

@x3oo
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x3oo commented Aug 22, 2021

OSError: /home/buttermelted/bin/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin/sharpy/lib/UVLM/lib/libuvlm.so)
isnt this the wrong directory? shouldnt it be searching in another directory?

@x3oo
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x3oo commented Aug 23, 2021

Ive installed anaconda3 through the official installer. and then installed sharpy according to instructions and still get the same error.

[buttermelted@thinkpad ~]$ conda activate
(base) [buttermelted@thinkpad ~]$ conda deactivate
[buttermelted@thinkpad ~]$ cd bin2/
[buttermelted@thinkpad bin2]$ git clone --recursive http://github.com/ImperialCollegeLondon/sharpy
Cloning into 'sharpy'...
warning: redirecting to https://github.com/ImperialCollegeLondon/sharpy/
remote: Enumerating objects: 27766, done.
remote: Counting objects: 100% (3836/3836), done.
remote: Compressing objects: 100% (1422/1422), done.
remote: Total 27766 (delta 2713), reused 3457 (delta 2397), pack-reused 23930
Receiving objects: 100% (27766/27766), 58.11 MiB | 4.57 MiB/s, done.
Resolving deltas: 100% (19257/19257), done.
Submodule 'lib/UVLM' (http://github.com/imperialcollegelondon/UVLM) registered for path 'lib/UVLM'
Submodule 'lib/xbeam' (http://github.com/imperialcollegelondon/xbeam) registered for path 'lib/xbeam'
Cloning into '/home/buttermelted/bin2/sharpy/lib/UVLM'...
warning: redirecting to https://github.com/imperialcollegelondon/UVLM/
remote: Enumerating objects: 2015, done.
remote: Counting objects: 100% (685/685), done.
remote: Compressing objects: 100% (358/358), done.
remote: Total 2015 (delta 497), reused 494 (delta 307), pack-reused 1330
Receiving objects: 100% (2015/2015), 3.21 MiB | 4.58 MiB/s, done.
Resolving deltas: 100% (1400/1400), done.
Cloning into '/home/buttermelted/bin2/sharpy/lib/xbeam'...
warning: redirecting to https://github.com/imperialcollegelondon/xbeam/
remote: Enumerating objects: 900, done.
remote: Counting objects: 100% (29/29), done.
remote: Compressing objects: 100% (23/23), done.
remote: Total 900 (delta 16), reused 18 (delta 6), pack-reused 871
Receiving objects: 100% (900/900), 2.62 MiB | 3.81 MiB/s, done.
Resolving deltas: 100% (649/649), done.
Submodule path 'lib/UVLM': checked out 'eff039792d1e096564b89bb4f01975c798b0a7aa'
Submodule path 'lib/xbeam': checked out 'fb28eaadac70b35bccb04677123b77b1ee086b09'
[buttermelted@thinkpad bin2]$ python --version
Python 3.9.6
[buttermelted@thinkpad bin2]$ conda activate
(base) [buttermelted@thinkpad bin2]$ python --version
Python 3.8.8
(base) [buttermelted@thinkpad bin2]$ cd sharpy/utils/
(base) [buttermelted@thinkpad utils]$ conda env create -f environment_linux.yml
Collecting package metadata (repodata.json): done
Solving environment: done

==> WARNING: A newer version of conda exists. <==
current version: 4.10.1
latest version: 4.10.3

Please update conda by running

$ conda update -n base -c defaults conda

Downloading and Extracting Packages
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Preparing transaction: done
Verifying transaction: done
Executing transaction: done

To activate this environment, use

$ conda activate sharpy_env

To deactivate an active environment, use

$ conda deactivate

(base) [buttermelted@thinkpad utils]$ conda activate sharpy_env
(sharpy_env) [buttermelted@thinkpad utils]$ python --version
Python 3.7.5
(sharpy_env) [buttermelted@thinkpad utils]$ cd ..
(sharpy_env) [buttermelted@thinkpad sharpy]$ ls
bin CHANGELOG.md CONTRIBUTING.md docs LICENSE scripts tests
cases CMakeLists.txt Dockerfile lib README.md sharpy utils
(sharpy_env) [buttermelted@thinkpad sharpy]$ mkdir build
(sharpy_env) [buttermelted@thinkpad sharpy]$ cd build/
(sharpy_env) [buttermelted@thinkpad build]$ cmake ..
-- The C compiler identification is GNU 11.1.0
-- The CXX compiler identification is GNU 11.1.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- The Fortran compiler identification is GNU 11.1.0
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- Found MKL: /opt/intel/mkl/lib/intel64/libmkl_intel_lp64.so;/opt/intel/mkl/lib/intel64/libmkl_sequential.so;/opt/intel/mkl/lib/intel64/libmkl_core.so
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP_Fortran: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Looking for sgemm_
-- Looking for sgemm_ - not found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- Looking for sgemm_
-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib/libopenblas.so
-- Found OpenMP_C: -fopenmp
-- Found OpenMP_CXX: -fopenmp
-- Found OpenMP: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /home/buttermelted/bin2/sharpy/build
(sharpy_env) [buttermelted@thinkpad build]$ make install -j 8
make[1]: Entering directory '/home/buttermelted/bin2/sharpy/build'
make[2]: Entering directory '/home/buttermelted/bin2/sharpy/build'
make[2]: Entering directory '/home/buttermelted/bin2/sharpy/build'
Scanning dependencies of target uvlm
Scanning dependencies of target xbeam
make[2]: Leaving directory '/home/buttermelted/bin2/sharpy/build'
make[2]: Entering directory '/home/buttermelted/bin2/sharpy/build'
[ 3%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_sparse.f90.o
[ 7%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_shared.f90.o
[ 11%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_rot.f90.o
[ 15%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_fem.f90.o
[ 19%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_out.f90.o
[ 23%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_solv.f90.o
[ 26%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_mat.f90.o
[ 30%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/debug_utils.f90.o
make[2]: Leaving directory '/home/buttermelted/bin2/sharpy/build'
make[2]: Entering directory '/home/buttermelted/bin2/sharpy/build'
[ 34%] Building CXX object lib/UVLM/CMakeFiles/uvlm.dir/src/cpp_interface.cpp.o
[ 38%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_rotvect.f90.o
[ 42%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_lu.f90.o
[ 46%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_cbeam3.f90.o
[ 50%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_xbeam.f90.o
[ 53%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_perturb.f90.o
[ 57%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_base/lib_bgeom.f90.o
[ 61%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_undef.f90.o
[ 65%] Linking CXX shared library libuvlm.so
make[2]: Leaving directory '/home/buttermelted/bin2/sharpy/build'
[ 65%] Built target uvlm
[ 69%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_fdiff.f90.o
[ 76%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_asbly.f90.o
[ 76%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/cbeam3_asbly.f90.o
[ 80%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/cbeam3_solv.f90.o
[ 84%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_perturb.f90.o
[ 88%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/cbeam3_interface.f90.o
[ 92%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_solv.f90.o
[ 96%] Building Fortran object lib/xbeam/CMakeFiles/xbeam.dir/src/xbeam_interface.f90.o
[100%] Linking Fortran shared library libxbeam.so
make[2]: Leaving directory '/home/buttermelted/bin2/sharpy/build'
[100%] Built target xbeam
make[1]: Leaving directory '/home/buttermelted/bin2/sharpy/build'
Install the project...
-- Install configuration: "Release"
-- Installing: /home/buttermelted/bin2/sharpy/lib/xbeam/lib/libxbeam.so
-- Set runtime path of "/home/buttermelted/bin2/sharpy/lib/xbeam/lib/libxbeam.so" to ""
-- Installing: /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so
-- Set runtime path of "/home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so" to ""
(sharpy_env) [buttermelted@thinkpad build]$ source bin/sharpy_vars.sh
bash: bin/sharpy_vars.sh: No such file or directory
(sharpy_env) [buttermelted@thinkpad build]$ source ../bin/sharpy_vars.sh
SHARPy added to PATH from the directory: /home/buttermelted/bin2/sharpy/bin
(sharpy_env) [buttermelted@thinkpad build]$ python --version
Python 3.7.5
(sharpy_env) [buttermelted@thinkpad build]$ cd ..
(sharpy_env) [buttermelted@thinkpad sharpy]$ ls
bin CHANGELOG.md Dockerfile LICENSE sharpy
build CMakeLists.txt docs README.md tests
cases CONTRIBUTING.md lib scripts utils
(sharpy_env) [buttermelted@thinkpad sharpy]$ python -m unittest
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) running unittest Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
running unittest
EEE.Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) ETraceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
ETraceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) E/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:266: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead. for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator(): /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:312: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead. for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator(): Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
ETraceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) ETraceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
ETraceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) ETraceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
ETraceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) ETraceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
EEsE.Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) EE..Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
..sssE........../home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:266: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead.
for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator():
/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:312: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead.
for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator():
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) E.Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
E

ERROR: sharpy.linear.assembler (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.linear.assembler
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin2/sharpy/sharpy/linear/assembler/init.py", line 16, in
ss_interface.systems_dict_import[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/linear/assembler/linearuvlm.py", line 7, in
import sharpy.linear.src.linuvlm as linuvlm
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/linuvlm.py", line 27, in
import sharpy.linear.src.multisurfaces as multisurfaces
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/multisurfaces.py", line 8, in
import sharpy.linear.src.surface as surface
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/surface.py", line 10, in
import sharpy.aero.utils.uvlmlib as uvlmlib # SHARPy's main uvlm interface with cpp
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: sharpy.postproc (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.postproc
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin2/sharpy/sharpy/postproc/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/postproc/aerogridplot.py", line 11, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: sharpy.solvers (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.solvers
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_doublependulum (tests.coupled.multibody.double_pendulum.test_double_pendulum_geradin.TestDoublePendulum)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/multibody/double_pendulum/test_double_pendulum_geradin.py", line 209, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin2/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin2/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_testfixnodevelocitywrta (tests.coupled.multibody.fix_node_velocity_wrtA.test_fix_node_velocity_wrtA.TestFixNodeVelocitywrtA)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/multibody/fix_node_velocity_wrtA/test_fix_node_velocity_wrtA.py", line 61, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin2/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin2/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_testfixnodevelocitywrtg (tests.coupled.multibody.fix_node_velocity_wrtG.test_fix_node_velocity_wrtG.TestFixNodeVelocitywrtG)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/multibody/fix_node_velocity_wrtG/test_fix_node_velocity_wrtG.py", line 63, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin2/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin2/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_rotor (tests.coupled.prescribed.WindTurbine.test_rotor.TestRotor)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/prescribed/WindTurbine/test_rotor.py", line 88, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin2/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin2/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_static_aoa (tests.coupled.static.test_pazy_static.TestPazyCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/static/test_pazy_static.py", line 33, in test_static_aoa
Msf=Msf)
File "/home/buttermelted/bin2/sharpy/tests/coupled/static/pazy/generate_pazy.py", line 136, in generate_pazy
sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_smith2deg_g (tests.coupled.static.test_static.TestCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/static/test_static.py", line 65, in test_smith2deg_g
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_smith2deg_nog (tests.coupled.static.test_static.TestCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/static/test_static.py", line 40, in test_smith2deg_nog
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_smith4deg_g (tests.coupled.static.test_static.TestCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/static/test_static.py", line 85, in test_smith4deg_g
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_smith4deg_nog (tests.coupled.static.test_static.TestCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/static/test_static.py", line 115, in test_smith4deg_nog
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_dynamic_aoa (tests.io.test_pazy_udpout.TestPazyCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/io/test_pazy_udpout.py", line 32, in test_dynamic_aoa
cd=self.route_test_dir)
File "/home/buttermelted/bin2/sharpy/tests/io/generate_pazy_udpout.py", line 338, in generate_pazy_udp
sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: tests.linear.assembly.test_assembly (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.assembly.test_assembly
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin2/sharpy/tests/linear/assembly/test_assembly.py", line 15, in
import sharpy.linear.src.assembly as assembly
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/assembly.py", line 22, in
from sharpy.aero.utils.uvlmlib import dvinddzeta_cpp, eval_panel_cpp
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: tests.linear.derivatives.test_ders (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.derivatives.test_ders
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin2/sharpy/tests/linear/derivatives/test_ders.py", line 9, in
import sharpy.aero.utils.uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_flutter (tests.linear.goland_wing.test_goland_flutter.TestGolandFlutter)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 285, in test_flutter
self.setup()
File "/home/buttermelted/bin2/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 246, in setup
self.data = sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_flutter (tests.linear.goland_wing.test_goland_flutter.TestGolandFlutter)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 293, in tearDown
shutil.rmtree(self.route_test_dir + '/' + folder)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/shutil.py", line 485, in rmtree
onerror(os.lstat, path, sys.exc_info())
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/shutil.py", line 483, in rmtree
orig_st = os.lstat(path)
FileNotFoundError: [Errno 2] No such file or directory: '/home/buttermelted/bin2/sharpy/tests/linear/goland_wing/output'

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [Direct]

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [FrequencyLimited]

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [Iterative]

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: tests.linear.uvlm.test_infinite_span (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.uvlm.test_infinite_span
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin2/sharpy/tests/linear/uvlm/test_infinite_span.py", line 19, in
import sharpy.linear.src.linuvlm as linuvlm
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/linuvlm.py", line 27, in
import sharpy.linear.src.multisurfaces as multisurfaces
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/multisurfaces.py", line 8, in
import sharpy.linear.src.surface as surface
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/surface.py", line 10, in
import sharpy.aero.utils.uvlmlib as uvlmlib # SHARPy's main uvlm interface with cpp
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_generatecases (tests.utils.test_generate_cases.TestGenerateCases)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/utils/test_generate_cases.py", line 92, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin2/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin2/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_geradin (tests.xbeam.test_xbeam.TestGeradinXbeam)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/xbeam/test_xbeam.py", line 28, in test_geradin
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1


Ran 41 tests in 11.907s

FAILED (errors=23, skipped=4)
(sharpy_env) [buttermelted@thinkpad sharpy]$ conda deactivate
(base) [buttermelted@thinkpad sharpy]$ conda activate sharpy_envs
Could not find conda environment: sharpy_envs
You can list all discoverable environments with conda info --envs.

(base) [buttermelted@thinkpad sharpy]$ conda activate sharpy_env
(sharpy_env) [buttermelted@thinkpad sharpy]$ python -m unittest
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) running unittest Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
running unittest
EEE.Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) ETraceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
ETraceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) E/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:266: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead. for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator(): /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:312: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead. for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator(): Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
ETraceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) ETraceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
ETraceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) ETraceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
ETraceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) ETraceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
EEsE.Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) EE..Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
..sssE......./home/buttermelted/bin2/sharpy/sharpy/utils/algebra.py:899: UserWarning: Warning, approaching singularity. Delta 0.496 for singularity at Delta=0.5
warn('Warning, approaching singularity. Delta {:.3f} for singularity at Delta=0.5'.format(np.abs(delta)))
.../home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:266: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead.
for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator():
/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:312: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead.
for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator():
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) E.Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
E

ERROR: sharpy.linear.assembler (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.linear.assembler
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin2/sharpy/sharpy/linear/assembler/init.py", line 16, in
ss_interface.systems_dict_import[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/linear/assembler/linearuvlm.py", line 7, in
import sharpy.linear.src.linuvlm as linuvlm
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/linuvlm.py", line 27, in
import sharpy.linear.src.multisurfaces as multisurfaces
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/multisurfaces.py", line 8, in
import sharpy.linear.src.surface as surface
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/surface.py", line 10, in
import sharpy.aero.utils.uvlmlib as uvlmlib # SHARPy's main uvlm interface with cpp
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: sharpy.postproc (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.postproc
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin2/sharpy/sharpy/postproc/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/postproc/aerogridplot.py", line 11, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: sharpy.solvers (unittest.loader._FailedTest)

ImportError: Failed to import test module: sharpy.solvers
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
package = self._get_module_from_name(name)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_doublependulum (tests.coupled.multibody.double_pendulum.test_double_pendulum_geradin.TestDoublePendulum)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/multibody/double_pendulum/test_double_pendulum_geradin.py", line 209, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin2/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin2/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_testfixnodevelocitywrta (tests.coupled.multibody.fix_node_velocity_wrtA.test_fix_node_velocity_wrtA.TestFixNodeVelocitywrtA)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/multibody/fix_node_velocity_wrtA/test_fix_node_velocity_wrtA.py", line 61, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin2/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin2/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_testfixnodevelocitywrtg (tests.coupled.multibody.fix_node_velocity_wrtG.test_fix_node_velocity_wrtG.TestFixNodeVelocitywrtG)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/multibody/fix_node_velocity_wrtG/test_fix_node_velocity_wrtG.py", line 63, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin2/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin2/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_rotor (tests.coupled.prescribed.WindTurbine.test_rotor.TestRotor)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/prescribed/WindTurbine/test_rotor.py", line 88, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin2/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin2/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_static_aoa (tests.coupled.static.test_pazy_static.TestPazyCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/static/test_pazy_static.py", line 33, in test_static_aoa
Msf=Msf)
File "/home/buttermelted/bin2/sharpy/tests/coupled/static/pazy/generate_pazy.py", line 136, in generate_pazy
sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_smith2deg_g (tests.coupled.static.test_static.TestCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/static/test_static.py", line 65, in test_smith2deg_g
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_smith2deg_nog (tests.coupled.static.test_static.TestCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/static/test_static.py", line 40, in test_smith2deg_nog
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_smith4deg_g (tests.coupled.static.test_static.TestCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/static/test_static.py", line 85, in test_smith4deg_g
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_smith4deg_nog (tests.coupled.static.test_static.TestCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/coupled/static/test_static.py", line 115, in test_smith4deg_nog
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_dynamic_aoa (tests.io.test_pazy_udpout.TestPazyCoupledStatic)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/io/test_pazy_udpout.py", line 32, in test_dynamic_aoa
cd=self.route_test_dir)
File "/home/buttermelted/bin2/sharpy/tests/io/generate_pazy_udpout.py", line 338, in generate_pazy_udp
sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: tests.linear.assembly.test_assembly (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.assembly.test_assembly
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin2/sharpy/tests/linear/assembly/test_assembly.py", line 15, in
import sharpy.linear.src.assembly as assembly
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/assembly.py", line 22, in
from sharpy.aero.utils.uvlmlib import dvinddzeta_cpp, eval_panel_cpp
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: tests.linear.derivatives.test_ders (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.derivatives.test_ders
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin2/sharpy/tests/linear/derivatives/test_ders.py", line 9, in
import sharpy.aero.utils.uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_flutter (tests.linear.goland_wing.test_goland_flutter.TestGolandFlutter)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 285, in test_flutter
self.setup()
File "/home/buttermelted/bin2/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 246, in setup
self.data = sharpy.sharpy_main.main(['', ws.route + ws.case_name + '.sharpy'])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_flutter (tests.linear.goland_wing.test_goland_flutter.TestGolandFlutter)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/linear/goland_wing/test_goland_flutter.py", line 293, in tearDown
shutil.rmtree(self.route_test_dir + '/' + folder)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/shutil.py", line 485, in rmtree
onerror(os.lstat, path, sys.exc_info())
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/shutil.py", line 483, in rmtree
orig_st = os.lstat(path)
FileNotFoundError: [Errno 2] No such file or directory: '/home/buttermelted/bin2/sharpy/tests/linear/goland_wing/output'

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [Direct]

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [FrequencyLimited]

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_roms (tests.linear.rom.test_rom_framework.TestROMFramework) [Iterative]

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/linear/rom/test_rom_framework.py", line 253, in test_roms
sharpy.sharpy_main.main(['', self.ws.route + self.ws.case_name + '.sharpy'])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: tests.linear.uvlm.test_infinite_span (unittest.loader._FailedTest)

ImportError: Failed to import test module: tests.linear.uvlm.test_infinite_span
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 436, in _find_test_path
module = self._get_module_from_name(name)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
import(name)
File "/home/buttermelted/bin2/sharpy/tests/linear/uvlm/test_infinite_span.py", line 19, in
import sharpy.linear.src.linuvlm as linuvlm
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/linuvlm.py", line 27, in
import sharpy.linear.src.multisurfaces as multisurfaces
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/multisurfaces.py", line 8, in
import sharpy.linear.src.surface as surface
File "/home/buttermelted/bin2/sharpy/sharpy/linear/src/surface.py", line 10, in
import sharpy.aero.utils.uvlmlib as uvlmlib # SHARPy's main uvlm interface with cpp
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_generatecases (tests.utils.test_generate_cases.TestGenerateCases)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/utils/test_generate_cases.py", line 92, in setUp
SimInfo.set_default_values()
File "/home/buttermelted/bin2/sharpy/sharpy/utils/generate_cases.py", line 1640, in set_default_values
aux_names = solver_interface.dictionary_of_solvers(print_info=False)
File "/home/buttermelted/bin2/sharpy/sharpy/utils/solver_interface.py", line 99, in dictionary_of_solvers
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1

======================================================================
ERROR: test_geradin (tests.xbeam.test_xbeam.TestGeradinXbeam)

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/tests/xbeam/test_xbeam.py", line 28, in test_geradin
sharpy.sharpy_main.main(['', solver_path])
File "/home/buttermelted/bin2/sharpy/sharpy/sharpy_main.py", line 41, in main
import sharpy.solvers
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/init.py", line 16, in
solver_interface.solvers[file] = importlib.import_module(import_path + "." + file)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/importlib/init.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "/home/buttermelted/bin2/sharpy/sharpy/solvers/staticuvlm.py", line 5, in
import sharpy.aero.utils.uvlmlib as uvlmlib
File "/home/buttermelted/bin2/sharpy/sharpy/aero/utils/uvlmlib.py", line 10, in
UvlmLib = ct_utils.import_ctypes_lib(SharpyDir + '/lib/UVLM/lib/', 'libuvlm')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 23, in import_ctypes_lib
sys.exit(1)
SystemExit: 1


Ran 41 tests in 12.086s

FAILED (errors=23, skipped=4)
(sharpy_env) [buttermelted@thinkpad sharpy]$ source sharpy/
aero/ init.py postproc/ rom/ structure/
controllers/ io/ presharpy/ sharpy_main.py utils/
generators/ linear/ pycache/ solvers/
(sharpy_env) [buttermelted@thinkpad sharpy]$ source bin/sharpy
sharpy sharpy_vars.sh
(sharpy_env) [buttermelted@thinkpad sharpy]$ source bin/sharpy_vars.sh
SHARPy added to PATH from the directory: /home/buttermelted/bin2/sharpy/bin
(sharpy_env) [buttermelted@thinkpad sharpy]$ python -m unittest
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) running unittest Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
running unittest
EEE.Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) ETraceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
ETraceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) E/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:266: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead. for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator(): /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:312: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead. for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator(): Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
ETraceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) ETraceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
ETraceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) ETraceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
ETraceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) ETraceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
EEsE.Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) EE..Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
Traceback (most recent call last):
File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib
library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/init.py", line 364, in init
self._handle = _dlopen(self._name, mode)
OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so) Traceback (most recent call last): File "/home/buttermelted/bin2/sharpy/sharpy/utils/ctypes_utils.py", line 18, in import_ctypes_lib library = ct.CDLL(lib_path, mode=ct.RTLD_GLOBAL) File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/ctypes/__init__.py", line 364, in __init__ self._handle = _dlopen(self._name, mode) OSError: /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version GLIBCXX_3.4.29' not found (required by /home/buttermelted/bin2/sharpy/lib/UVLM/lib/libuvlm.so)
..sssE........../home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:266: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead.
for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator():
/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py:312: PendingDeprecationWarning: This method will be removed in future versions. Use 'tree.iter()' or 'list(tree.iter())' instead.
for elem in self.tree.iter() if Element_has_iter else self.tree.getiterator():
^CTraceback (most recent call last):
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/runpy.py", line 193, in _run_module_as_main
"main", mod_spec)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/runpy.py", line 85, in _run_code
exec(code, run_globals)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/main.py", line 18, in
main(module=None)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/main.py", line 101, in init
self.runTests()
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/main.py", line 271, in runTests
self.result = testRunner.run(self.test)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/runner.py", line 176, in run
test(result)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/suite.py", line 84, in call
return self.run(*args, **kwds)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/suite.py", line 122, in run
test(result)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/suite.py", line 84, in call
return self.run(*args, **kwds)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/suite.py", line 122, in run
test(result)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/suite.py", line 84, in call
return self.run(*args, **kwds)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/suite.py", line 122, in run
test(result)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/case.py", line 676, in call
return self.run(*args, **kwds)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/unittest/case.py", line 624, in run
self.setUp()
File "/home/buttermelted/bin2/sharpy/tests/utils/test_generate_cases.py", line 81, in setUp
options)
File "/home/buttermelted/bin2/sharpy/cases/templates/template_wt.py", line 188, in rotor_from_excel_type03
BMassDen = gc.read_column_sheet_type01(excel_file_name, excel_sheet_structural_blade, 'BMassDen')
File "/home/buttermelted/bin2/sharpy/sharpy/utils/generate_cases.py", line 166, in read_column_sheet_type01
xls = pd.ExcelFile(excel_file_name)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_base.py", line 819, in init
self._reader = self._enginesengine
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_xlrd.py", line 21, in init
super().init(filepath_or_buffer)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_base.py", line 359, in init
self.book = self.load_workbook(filepath_or_buffer)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/pandas/io/excel/_xlrd.py", line 36, in load_workbook
return open_workbook(filepath_or_buffer)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/init.py", line 138, in open_workbook
ragged_rows=ragged_rows,
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py", line 841, in open_workbook_2007_xml
x12sheet.process_stream(zflo, heading)
File "/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/python3.7/site-packages/xlrd/xlsx.py", line 554, in own_process_stream
elif elem.tag == U_SSML12 + "mergeCell":
KeyboardInterrupt
(sharpy_env) [buttermelted@thinkpad sharpy]$

@x3oo
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x3oo commented Aug 23, 2021

[buttermelted@thinkpad build]$ find /home/buttermelted/bin2/anaconda3/envs/ -name libstdc
/home/buttermelted/bin2/anaconda3/envs/sharpy_env/conda-meta/libstdcxx-ng-9.3.0-hd4cf53a_17.json
/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/libstdc++.so.6
/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/libstdc++.so
/home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/libstdc++.so.6.0.28
/home/buttermelted/bin2/anaconda3/envs/sharpy_env/share/licenses/libstdc++

@x3oo
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x3oo commented Aug 23, 2021

i think its an error inside the sharpy packages

@x3oo
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x3oo commented Aug 23, 2021

[buttermelted@thinkpad build]$ strings /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/libstdc++.so.6 | grep GLIBCXX_3.4.28
GLIBCXX_3.4.28
GLIBCXX_3.4.28
[buttermelted@thinkpad build]$ strings /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/libstdc++.so.6 | grep GLIBCXX_3.4.29

@x3oo
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x3oo commented Aug 23, 2021

there is a dependency issue in sharpy

@x3oo
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x3oo commented Aug 23, 2021

i need a newer version of glibcxx

@x3oo
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x3oo commented Aug 23, 2021

(sharpy_env) [buttermelted@thinkpad build]$ strings /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/libstdc++.so.6.0.28 | grep GLIBCXX_3.4.29
returns nothing
(sharpy_env) [buttermelted@thinkpad build]$ strings /home/buttermelted/bin2/anaconda3/envs/sharpy_env/lib/libstdc++.so.6.0.28 | grep GLIBCXX_3.4.28
GLIBCXX_3.4.28
GLIBCXX_3.4.28

@ArturoMS13
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Dear x3oo,

I am sorry to hear that you have problems with the libraries. Sadly, I cannot provide you support with this. I would suggest using sharpy on another machine or in a virtual machine. We are using it on CentOS and Ubuntu 20 and it works.

Otherwise, I would suggest you to look for solutions online like, for example:

Best regards, Arturo.

@x3oo
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x3oo commented Aug 23, 2021

vtk seems to be installed now and its only libstdcc remaining,
it looks like an upstream error to me because ubuntu is usually using older packages.

@x3oo
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x3oo commented Aug 23, 2021

i am going to use docker,
i used the latest anaconda build and of course used the latest sharpy build.
i dont quite know how anaconda works, but the next best guess is that youre using an older version of anaconda?

@ArturoMS13
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I close this issue because it is not strictly related to SHARPy.

@x3oo
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x3oo commented Aug 24, 2021

thats just wishful thinking on your side, if its an upstream issue you will get the same problem at a later point in time.

@ArturoMS13
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Dear x3oo,
it was definitely wishful thinking.
I can see you are using gcc 11 compilers so David might have helped us with your issue (#169)
I hope this helps. Best regards.

@DavidAnderegg
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DavidAnderegg commented Aug 25, 2021

From your first post at the beginning:
...home/buttermelted/.conda/envs/sharpy_env/lib/python3.7/site-packages/scipy/sparse/../../../../libstdc++.so.6: version `GLIBCXX_3.4.29' not found....
This error is exactly the same error i had and is caused by scipy because it was compiled with gcc9 and you are most likely using gcc11.

Either you recompile scipy locally with gcc11 or you compile sharpy with gcc9 (thats what i did)

@x3oo
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x3oo commented Aug 25, 2021

Thank you very much. archlinux is an upstream distribution, everything that hasnt much to do with the OS should work or its a current issue/bug in the package.

@ngoiz ngoiz changed the title failed test Failed Test Nov 11, 2021
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