getOntologyIdForAbbreviation Error

[DanBerrios]

This error shows up for only of our curated data sets, and only in v1.7.9, not in v.1.7.7 -- using identical configuration files. Any insights?

previousGlassPane=javax.swing.JPanel[null.glassPane,0,0,999x700,layout=java.awt.
GridBagLayout,alignmentX=0.0,alignmentY=0.0,border=,flags=16777217,maximumSize=,
minimumSize=,preferredSize=]
imageProgressorg.isatools.isacreator.effects.InfiniteImageProgressPanel[,0,0,0x0
,invalid,layout=java.awt.BorderLayout,alignmentX=0.0,alignmentY=0.0,border=,flag
s=16777217,maximumSize=,minimumSize=,preferredSize=]
imageProgress = org.isatools.isacreator.effects.InfiniteImageProgressPanel[,0,0,
999x700,invalid,layout=java.awt.BorderLayout,alignmentX=0.0,alignmentY=0.0,borde
r=,flags=16777217,maximumSize=,minimumSize=,preferredSize=]
Data entry panel changed & initialised

Processing E-GEOD-37233
java.lang.NullPointerException
at org.isatools.isacreator.ontologymanager.bioportal.io.AcceptedOntologi
es.getOntologyIdForAbbreviation(AcceptedOntologies.java:104)
at org.isatools.isacreator.io.importisa.ISAtabImporter.addMissingOntolog
yRefsForAssayDefinition(ISAtabImporter.java:353)
at org.isatools.isacreator.io.importisa.ISAtabImporter.processInvestigat
ion(ISAtabImporter.java:298)
at org.isatools.isacreator.io.importisa.ISAtabImporter.commonImportFile(
ISAtabImporter.java:180)
at org.isatools.isacreator.gui.io.importisa.ISAtabFilesImporterFromGUI.i
mportFile(ISAtabFilesImporterFromGUI.java:73)
at org.isatools.isacreator.gui.menu.ImportFilesMenu$2.run(ImportFilesMen
u.java:171)
at java.lang.Thread.run(Unknown Source)

[agbeltran]

Hi @DanBerrios, is this happening when trying to load/open the dataset? Are you using the default configuration files or a different configuration file?

[DanBerrios]

Hi @agbeltran . It's only occurring on one specific dataset that we try to load, yes. It doesn't happen with other datasets, using the same config, which is one we developed ourselves.