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Add Schaefer atlas #1651

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3 of 7 tasks
MDijsselhof opened this issue Mar 18, 2024 · 0 comments
Open
3 of 7 tasks

Add Schaefer atlas #1651

MDijsselhof opened this issue Mar 18, 2024 · 0 comments
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@MDijsselhof
Labels
feature New feature, enhancement or request
Milestone
Release 1.12.0

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@MDijsselhof
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MDijsselhof commented Mar 18, 2024 •
edited

Description

Add Schaefer atlas for analyses regarding functional network ROIs. Github: https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI and paper: https://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf

Tasks

  • Add template .nii.gz's
  • Change template to 1.5 mm resolution
  • Add labels
  • Add license
    • email to check for license
  • Fix template alignment
    - Take MNI2009c T1 template image (which is the corresponding template for your template) then you (using SPM) coregister non-linearly MNI2009c T1 template with the IXI512 T1 template, and you apply this transformation to yourschaefer atlas. and you use the result.
  • Add to readme

It appears the template is not perfectly aligned with the ExploreASL MNI 1mm template. See below:

image

How to test

Optional: insert description about how to test the code changes here

Release notes

Required: summarize the changes for the release notes here
@MDijsselhof MDijsselhof added the feature New feature, enhancement or request label Mar 18, 2024
@MDijsselhof MDijsselhof self-assigned this Mar 18, 2024
MDijsselhof added a commit that referenced this issue Mar 18, 2024
@MDijsselhof
#1651 added atlas files
8828630
MDijsselhof added a commit that referenced this issue Mar 20, 2024
@MDijsselhof
#1651 added correct license and changed files to .tsv
8c1e99b
@jan-petr jan-petr added this to the Release 1.12.0 milestone Mar 27, 2024
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@jan-petr @MDijsselhof