Dimensionalities of word minibatch and Embedding layer don't match

[gabrer]

I wonder whether there is an error due to what Pytorch is expecting as input to the nn.Embedding module.

In the function train_data(), it's written:

 for i in xrange(max_sents):
        _s, state_word, _ = word_attn_model(mini_batch[i,:,:].transpose(0,1), state_word)

In this way, after the .transpose(0,1), the resulting mini_batch matrix has size (max_tokens, batch_size).

However, the first function to be called in the forward() is the self.lookup(embed), which is expecting a (batch_size, list_of_indeces).

Currently, the lookup function is (wrongly!?) extracting first all the word embeddings for the beggining words of each sentence in the minibatch. Then, all the word embeddings for the second words and so on.
To be fixed, it just needs to be without the .transpose(0,1).

If this is correct, it requires to fix up all the following code.

[Sandeep42]

I am not quite sure if there is an issue, it's been a long time. I believe I'm also doing a transpose while creating the mini-batch itself, so we have two transposes which sort of cancel each other out. I don't remember why I chose to do this way.

def pad_batch(mini_batch):
    mini_batch_size = len(mini_batch)
    max_sent_len = int(np.mean([len(x) for x in mini_batch]))
    max_token_len = int(np.mean([len(val) for sublist in mini_batch for val in sublist]))
    main_matrix = np.zeros((mini_batch_size, max_sent_len, max_token_len), dtype= np.int)
    for i in xrange(main_matrix.shape[0]):
        for j in xrange(main_matrix.shape[1]):
            for k in xrange(main_matrix.shape[2]):
                try:
                    main_matrix[i,j,k] = mini_batch[i][j][k]
                except IndexError:
                    pass
    return Variable(torch.from_numpy(main_matrix).transpose(0,1))