Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Strict redaction - define minimum required meta #165

Open
cooperlab opened this issue Oct 16, 2023 · 4 comments · May be fixed by #221
Open

Strict redaction - define minimum required meta #165

cooperlab opened this issue Oct 16, 2023 · 4 comments · May be fixed by #221
Labels
enhancement New feature or request

Comments

@cooperlab
Copy link

Define the minimum required metadata necessary to load .svs. This will allow users to appy a "strict" redaction profile without requiring the institution to inspect a bunch of tags. Start with .svs since the viewers and dataloaders are more mature.

@manthey
Copy link
Contributor

manthey commented Oct 16, 2023

This could be done by having a struct ruleset with a fallback rule for unknown tags/images which removes those tags/images. We'd have to add a fallback rule.

@cooperlab
Copy link
Author

A good test here is can we read the images with large_image or openslide, and can they still be opened in QuPath.

@naglepuff naglepuff added the enhancement New feature or request label Apr 30, 2024
@naglepuff
Copy link
Collaborator

I've been doing some reading of the tiff standard to try and figure out how to determine what the minimum tag set would be. A good starting point would be the baseline tiff plus any tiff extensions commonly used by whole slide images. I'm not sure what those would be, however.

I imagine that the "Tiled Images" tag set should definitely be included, but the others are unclear.

I believe this screenshot captures all of the tiff extensions defined by Tiff 6.0. Which ones should be included in the minimum tagset for this sort of redaction?

image

@manthey
Copy link
Contributor

manthey commented May 2, 2024

The required fields are
image
plus 254, 266, 274, 317, 320, 322, 323, 324, 325, 330, 338, 339, 346, 347, 512-531, 559, 34675

@naglepuff naglepuff linked a pull request May 20, 2024 that will close this issue
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

Successfully merging a pull request may close this issue.

3 participants