#2175: Add YAML as input as alternative to command-line arguments #2230

cwschilly · 2023-12-20T16:35:31Z

Usage

Pass a yaml config file with

--vt_input_config_yaml /path/to/yaml/file

The order of precedence is currently

input yaml
command line arguments
input toml or ini file,

meaning that the YAML will overwrite the command line arguments (which in turn overwrite the input toml file). I'm looking into ways to restore the priority of command line arguments over the config files.

Changes to `yaml-cpp`

I had to make changes to the yaml-cpp library in order to avoid variable shadowing errors. I mostly used the solution from this PR, which added enum class where appropriate.

In one case, I had to change a variable name from YAML::Null to YAML::BaseNull (to avoid shadowing YAML::NodeType::Null). I don't foresee this having consequences for our development (if we want to check if some input is null, we would use YAML::NodeType::Null).

I also made yaml-cpp a system include directory to silence all warnings (-Wtautological-constant-compare was throwing an error on the intel icpx pipeline--this issue explains why it is not a meaningful warning and can be safely silenced).

github-actions · 2023-12-20T16:38:02Z

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remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhibited by limit max-total-size 
remark #11076: To get full report use -qopt-report=4 -qopt-report-phase ipo
remark #11074: Inlining inhibited by limit max-size 
remark #11074: Inlining inhi%0D%0A%0D%0A%0D%0A ==> And there is more. Read log. <==

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/vt/src/vt/pipe/pipe_manager.impl.h(135): warning: missing return statement at end of non-void function "vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&vt::vrt::collection::lb::GreedyLB::collectHandler, Target=vt::objgroup::proxy::ProxyElm<vt::vrt::collection::lb::GreedyLB>]"
          detected during:
            instantiation of "auto vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&vt::vrt::collection::lb::GreedyLB::collectHandler, Target=vt::objgroup::proxy::ProxyElm<vt::vrt::collection::lb::GreedyLB>]" 
/vt/src/vt/objgroup/proxy/proxy_objgroup.impl.h(204): here
            instantiation of "vt::objgroup::proxy::Proxy<ObjT>::PendingSendType vt::objgroup::proxy::Proxy<ObjT>::reduce<f,Op,Target,Args...>(Target, Args &&...) const [with ObjT=vt::vrt::collection::lb::GreedyLB, f=&vt::vrt::collection::lb::GreedyLB::collectHandler, Op=vt::collective::PlusOp, Target=vt::objgroup::proxy::ProxyElm<vt::vrt::collection::lb::GreedyLB>, Args=<vt::vrt::collection::lb::GreedyPayload>]" 
/vt/src/vt/vrt/collection/balance/greedylb/greedylb.cc(222): here

/vt/src/vt/pipe/pipe_manager.impl.h(135): warning: missing return statement at end of non-void function "vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&MyObj::handler, Target=vt::objgroup::proxy::ProxyElm<MyObj>]"
          detected during instantiation of "auto vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&MyObj::handler, Target=vt::objgroup::proxy::ProxyElm<MyObj>]" 
/vt/examples/callback/callback.cc(147): here

/vt/src/vt/pipe/pipe_manager.impl.h(135): warning: missing return statement at end of non-void function "vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&colHan, Target=vt::vrt::collection::VrtElmProxy<MyCol, vt::Index1D>]"
          detected during instantiation of "auto vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&colHan, Target=vt::vrt::collection::VrtElmProxy<MyCol, vt::Index1D>]" 
/vt/examples/callback/callback.cc(153): here

/vt/src/vt/pipe/pipe_manager.impl.h(135): warning: missing return statement at end of non-void function "vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&MyObj::handler, Target=vt::objgroup::proxy::ProxyElm<MyObj>]"
          detected during instantiation of "auto vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&MyObj::handler, Target=vt::objgroup::proxy::ProxyElm<MyObj>]" 
/vt/examples/callback/callback.cc(147): here

/vt/src/vt/pipe/pipe_manager.impl.h(135): warning: missing return statement at end of non-void function "vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&colHan, Target=vt::vrt::collection::VrtElmProxy<MyCol, vt::Index1D>]"
          detected during instantiation of "auto vt::pipe::PipeManager::makeSend<f,Target>(Target) [with f=&colHan, Target=vt::vrt::collection::VrtElmProxy<MyCol, vt::Index1D>]" 
/vt/examples/callback/callback.cc(153%0D%0A%0D%0A%0D%0A ==> And there is more. Read log. <==

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PR tests (clang-13, alpine, mpich)

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PR tests (intel icpx, ubuntu, mpich)

Build for 1863492 (2024-04-18 23:12:29 UTC)

In file included from /vt/lib/yaml-cpp/src/convert.cpp:3:
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:103:7: warning: comparison with NaN always evaluates to false in fast floating point modes [-Wtautological-constant-compare]
  if (std::isnan(rhs)) {
      ^~~~~~~~~~~~~~~
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:212:1: note: in instantiation of function template specialization 'YAML::conversion::inner_encode<float>' requested here
YAML_DEFINE_CONVERT_STREAMABLE_SIGNED(float);
^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:194:3: note: expanded from macro 'YAML_DEFINE_CONVERT_STREAMABLE_SIGNED'
  YAML_DEFINE_CONVERT_STREAMABLE(type, -)
  ^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:155:19: note: expanded from macro 'YAML_DEFINE_CONVERT_STREAMABLE'
      conversion::inner_encode(rhs, stream);                               \n                  ^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:105:14: warning: comparison with infinity always evaluates to false in fast floating point modes [-Wtautological-constant-compare]
  } else if (std::isinf(rhs)) {
             ^~~~~~~~~~~~~~~
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:103:7: warning: comparison with NaN always evaluates to false in fast floating point modes [-Wtautological-constant-compare]
  if (std::isnan(rhs)) {
      ^~~~~~~~~~~~~~~
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:213:1: note: in instantiation of function template specialization 'YAML::conversion::inner_encode<double>' requested here
YAML_DEFINE_CONVERT_STREAMABLE_SIGNED(double);
^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:194:3: note: expanded from macro 'YAML_DEFINE_CONVERT_STREAMABLE_SIGNED'
  YAML_DEFINE_CONVERT_STREAMABLE(type, -)
  ^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:155:19: note: expanded from macro 'YAML_DEFINE_CONVERT_STREAMABLE'
      conversion::inner_encode(rhs, stream);                               \n                  ^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:105:14: warning: comparison with infinity always evaluates to false in fast floating point modes [-Wtautological-constant-compare]
  } else if (std::isinf(rhs)) {
             ^~~~~~~~~~~~~~~
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:103:7: warning: comparison with NaN always evaluates to false in fast floating point modes [-Wtautological-constant-compare]
  if (std::isnan(rhs)) {
      ^~~~~~~~~~~~~~~
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:214:1: note: in instantiation of function template specialization 'YAML::conversion::inner_encode<long double>' requested here
YAML_DEFINE_CONVERT_STREAMABLE_SIGNED(long double);
^
/vt/lib/yaml-cpp/include/yaml-cpp/node/convert.h:194:3: note: expanded from macro 'YAML_DEFINE_CONVERT_STREAMABLE_SIGNED'
  YAML_DEFINE_CON%0D%0A%0D%0A%0D%0A ==> And there is more. Read log. <==

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PR tests (nvidia cuda 12.2.0, gcc-9, ubuntu, mpich)

Build for 1863492 (2024-04-18 23:12:29 UTC)

/vt/lib/CLI/CLI/CLI11.hpp(1029): warning #2361-D: invalid narrowing conversion from "double" to "unsigned long"
          TT { std::declval<CC>() }
               ^
          detected during:
            instantiation of "vt::CLI::detail::is_direct_constructible<T, C>::test [with T=std::vector<std::string, std::allocator<std::string>>, C=double]" based on template arguments <std::vector<std::string, std::allocator<std::string>>, double> at line 1041
            instantiation of class "vt::CLI::detail::is_direct_constructible<T, C> [with T=std::vector<std::string, std::allocator<std::string>>, C=double]" at line 5005
            instantiation of "void vt::CLI::Option::results(T &) const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 5034
            instantiation of "T vt::CLI::Option::as<T>() const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 7315

Remark: The warnings can be suppressed with "-diag-suppress <warning-number>"

/vt/lib/CLI/CLI/CLI11.hpp(1029): warning #2361-D: invalid narrowing conversion from "int" to "unsigned long"
          TT { std::declval<CC>() }
               ^
          detected during:
            instantiation of "vt::CLI::detail::is_direct_constructible<T, C>::test [with T=std::vector<std::string, std::allocator<std::string>>, C=int]" based on template arguments <std::vector<std::string, std::allocator<std::string>>, int> at line 1041
            instantiation of class "vt::CLI::detail::is_direct_constructible<T, C> [with T=std::vector<std::string, std::allocator<std::string>>, C=int]" at line 5005
            instantiation of "void vt::CLI::Option::results(T &) const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 5034
            instantiation of "T vt::CLI::Option::as<T>() const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 7315

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PR tests (gcc-12, ubuntu, mpich, verbose)

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Testing - passed

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Testing - passed

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PR tests (clang-14, ubuntu, mpich, verbose)

Build for 8eda5a8 (2024-05-30 19:00:18 UTC)

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PR tests (nvidia cuda 12.2.0, gcc-9, ubuntu, mpich, verbose)

Build for 8eda5a8 (2024-05-30 19:00:18 UTC)

/vt/lib/CLI/CLI/CLI11.hpp(1029): warning #2361-D: invalid narrowing conversion from "double" to "unsigned long"
          TT { std::declval<CC>() }
               ^
          detected during:
            instantiation of "vt::CLI::detail::is_direct_constructible<T, C>::test [with T=std::vector<std::string, std::allocator<std::string>>, C=double]" based on template arguments <std::vector<std::string, std::allocator<std::string>>, double> at line 1041
            instantiation of class "vt::CLI::detail::is_direct_constructible<T, C> [with T=std::vector<std::string, std::allocator<std::string>>, C=double]" at line 5005
            instantiation of "void vt::CLI::Option::results(T &) const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 5034
            instantiation of "T vt::CLI::Option::as<T>() const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 7315

Remark: The warnings can be suppressed with "-diag-suppress <warning-number>"

/vt/lib/CLI/CLI/CLI11.hpp(1029): warning #2361-D: invalid narrowing conversion from "int" to "unsigned long"
          TT { std::declval<CC>() }
               ^
          detected during:
            instantiation of "vt::CLI::detail::is_direct_constructible<T, C>::test [with T=std::vector<std::string, std::allocator<std::string>>, C=int]" based on template arguments <std::vector<std::string, std::allocator<std::string>>, int> at line 1041
            instantiation of class "vt::CLI::detail::is_direct_constructible<T, C> [with T=std::vector<std::string, std::allocator<std::string>>, C=int]" at line 5005
            instantiation of "void vt::CLI::Option::results(T &) const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 5034
            instantiation of "T vt::CLI::Option::as<T>() const [with T=std::vector<std::string, std::allocator<std::string>>]" at line 7315

/vt/tests/perf/send_cost.cc(169): warning #177-D: variable "prevNode" was declared but never referenced
    auto const prevNode = (thisNode - 1 + num_nodes_) % num_nodes_;
               ^

Remark: The warnings can be suppressed with "-diag-suppress <warning-number>"

Testing - passed

Build log

src/vt/configs/arguments/args.cc

cwschilly · 2023-12-20T21:21:56Z

I'm not sure what's going on with the PR checks (git --check) pipeline--there isn't any trailing white space in the file it's talking about

JacobDomagala · 2023-12-21T13:16:12Z

I think we should strip it down to bare minimum. We don't need test and contributing dirs. That would also resolve the trailing whitespace issue : )

Should we support using external yaml-cpp? Same way we intent to do with fmt (#2221)

cwschilly · 2023-12-21T15:18:35Z

Should we support using external yaml-cpp? Same way we intent to do with fmt (#2221)

I think this makes sense, especially since it seems the yaml-cpp source code doesn't pass the CI

JacobDomagala · 2023-12-22T11:55:10Z

Also, is the use of a yaml-based config file incentivized by something (like Empire already using that file type)? If not, maybe we should consider using JSON for the config file as well? We already have it set up, and its structure is well-known to everyone.

lifflander · 2024-01-02T22:08:38Z

Also, is the use of a yaml-based config file incentivized by something (like Empire already using that file type)? If not, maybe we should consider using JSON for the config file as well? We already have it set up, and its structure is well-known to everyone.

Yes, Empire is using YAML for their input and we want to be able to pass that directly to VT. LBAF and vt-tv are also using YAML so it seems that that route makes sense.

cwschilly · 2024-01-03T22:10:43Z

I've taken the approach of this PR (using enum classes) in order to resolve the clang warnings.

cwschilly · 2024-01-04T21:21:46Z

lib/yaml-cpp/include/yaml-cpp/null.h

+YAML_CPP_API bool IsNull(const Node& node);  // old API only
+YAML_CPP_API bool IsNullString(const std::string& str);
+
+extern YAML_CPP_API _Null BaseNull;


To avoid the shadowing warning caused by this (previously named YAML::Null) and YAML::NodeType::Null, I've renamed this variable to YAML::BaseNull. I don't imagine that this will have any far-reaching consequences, but I want to highlight it just in case.

lib/yaml-cpp/CMakeLists.txt

lifflander · 2024-04-30T22:56:00Z

@cwschilly Summary of our discussion:

Let's output the current configuration as a YAML file
Use this output for testing input is working properly
For the debug print configuration, take a list of components to output debug print statements
Create further nesting for inputs, like the "LB Data Output"/"Statistics"/"LB Data Input"

…test for reading input yaml

…ents

cwschilly self-assigned this Dec 20, 2023

cwschilly linked an issue Dec 20, 2023 that may be closed by this pull request

Add YAML as input as alternative to command-line arguments #2175

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cwschilly marked this pull request as draft December 20, 2023 16:35

cwschilly commented Dec 20, 2023

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cwschilly marked this pull request as ready for review December 20, 2023 21:20

cwschilly requested review from lifflander, thearusable, JacobDomagala, nlslatt, stmcgovern and ppebay December 20, 2023 21:20

cwschilly marked this pull request as draft December 21, 2023 17:01

cwschilly marked this pull request as ready for review January 3, 2024 22:12

cwschilly force-pushed the 2175-add-yaml-as-input-as-alternative branch from 328fedf to 889748e Compare January 4, 2024 15:04

stmcgovern mentioned this pull request Jan 4, 2024

Update nvidia cuda version for CI #2235

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cwschilly commented Jan 4, 2024

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cwschilly force-pushed the 2175-add-yaml-as-input-as-alternative branch 2 times, most recently from 0d5e7de to 18792a9 Compare January 5, 2024 13:43

lifflander force-pushed the 2175-add-yaml-as-input-as-alternative branch from 3241ee7 to cf76e82 Compare April 18, 2024 21:49

JacobDomagala reviewed Apr 23, 2024

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cwschilly requested a review from JacobDomagala April 30, 2024 16:42

cwschilly and others added 16 commits May 21, 2024 12:22

#2175: add back some of contrib dir

61fe604

#2175: fix clang warnings in yaml-cpp

d035087

#2175: add more enum classes to resolve warnings

ef1a8f5

#2175: revert commit 54c277f.

43d9c3a

#2175: undo changes to EmitterNodeType

596caf5

#2175: more fixes

8f8ffe7

#2175: change Null to BaseNull to avoid shadowing

2b54664

#2175: disable effc++ warnings

019330f

#2175: fix more intel warnings

3b94b02

#2175: args: change to camel case to follow style guidelines

9299b2c

#2175: args: change names of YAML input parameters

ff2ab27

#2175: args: fix trace MPI

e3d0637

#2175: try ignoring nan warning

74d0338

#2175: disable all warnings using SYSTEM

5a94e15

#2175: fix yaml input and improve hierarchy in input file

a6e0ffc

#2175: fix yaml input; add ability to write config as yaml; add unit …

c4cbec5

…test for reading input yaml

cwschilly force-pushed the 2175-add-yaml-as-input-as-alternative branch from 8ba5c3b to c4cbec5 Compare May 21, 2024 16:28

cwschilly added 6 commits May 22, 2024 10:33

#2175: add test for writing out yaml

12de215

#2175: try cmake fix

1f5e19d

#2175: add CI print statements to debug

d6bab59

#2175: try fixing yamlcpp include

45b57f4

#2175: add more debug statements

0097c16

#2175: add yamlcpp to trace_only_functions.cmake; remove print statem…

1f548ac

…ents

cwschilly marked this pull request as ready for review May 24, 2024 19:02

#2175: improve user options

e5b6e9f

cwschilly force-pushed the 2175-add-yaml-as-input-as-alternative branch from 451ba1c to e5b6e9f Compare May 28, 2024 14:44

cwschilly added 4 commits May 28, 2024 14:49

#2175: ensure compiler finds all yaml-cpp header files

50efe3d

#2175: fix failing test with lb disabled

2204f67

#2175: install yamlcpp in include dir

cb6168e

#2175: isolate yamlcpp include files

8eda5a8

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#2175: Add YAML as input as alternative to command-line arguments #2230

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#2175: Add YAML as input as alternative to command-line arguments #2230

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