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It would also be nice to have a column which indicates whether the sgSTOP recapitulates a frequent mutation in cancer or a place to search for cancer genes only.
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"Frequent" mutation is a little tricky as there is some duplication in COSMIC. It would be easier to just record how many times a site has been recorded in COSMIC. The iSTOP-paper project generates this dataset. So this can be easily added.
I think the gene annotation stuff (e.g. is a CGC tumor suppressor) is more appropriate for the website than for the package. However, iSTOP site annotation (e.g. observed in COSMIC) does make sense to include in the package.
It would also be nice to have a column which indicates whether the sgSTOP recapitulates a frequent mutation in cancer or a place to search for cancer genes only.
The text was updated successfully, but these errors were encountered: