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JVC giving NaN result in Matlab interface #3
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Ramon, Have you tried this outside the MATLAB interface with the same PSF and If you want to send me the images, I can take a look and see what is Thanks, On Sun, Jan 15, 2012 at 2:35 PM, rcasero
Cory Quammen |
On 19/01/12 22:10, cquammen wrote:
Hi Cory, I haven't tried it outside Matlab. I have been running some tests, and I have compiled Clarity without CUDA, and passed the images, 8 I have then tried running only 1 iteration, and what I see is that some I have tried normalizing the PSF and image, and the intensity values get If I run 2 iterations instead of 1, then some values get much larger. So what was happening with 8 iterations is that some of the intensity I'll send you two test images. Cheers, Ramon. Dr. Ramón Casero Cañas Computational Biology tlf +44 (0) 1865 610737 |
Hi Cory,
I hadn't noticed this, but it seems that even though the CUDA implementation now compiles and runs in Ubuntu with the Gerardus matlab interface, I'm getting as a result a volume of NaNs. For example running
uses Clarity_JansenVanCittertDeconvolve, and im is just an array of NaNs. It works fine with
that uses Clarity_MaximumLikelihoodDeconvolve. If I'm not wrong, Clarity_MaximumLikelihoodDeconvolve doesn't have a CUDA implementation.
I was just wondering whether you have observed something similar running Clarity by itself. Maybe this is just a problem when mixing it up with Matlab.
Best regards,
Ramon.
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