{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":27776512,"defaultBranch":"master","name":"FID-A","ownerLogin":"CIC-methods","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2014-12-09T16:47:42.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/9682906?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1563468726.0","currentOid":""},"activityList":{"items":[{"before":"89fbb21da153622c86713fb0bcaaa18b6f0ba748","after":"d841c12d44cbfe828e87c0b67de79a9d6c1e676e","ref":"refs/heads/master","pushedAt":"2023-12-06T15:55:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Minor change to the way that the transmitter frequency 'txfrq' is defined in 'sim_readout.m'.","shortMessageHtmlLink":"Minor change to the way that the transmitter frequency 'txfrq' is def…"}},{"before":"ff08cff7814673080a8c648e47945c69e1bcfee3","after":"89fbb21da153622c86713fb0bcaaa18b6f0ba748","ref":"refs/heads/master","pushedAt":"2023-12-06T15:54:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Fixed a minor typo in the header of 'rf_hs.m'.","shortMessageHtmlLink":"Fixed a minor typo in the header of 'rf_hs.m'."}},{"before":"0c2caa02e1a793e44a88b299c9316f5b7b38e63e","after":"ff08cff7814673080a8c648e47945c69e1bcfee3","ref":"refs/heads/master","pushedAt":"2023-12-06T15:50:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Also changing the default plotting linewidth in 'op_plotfid.m' from 1.2 to 2.0 pt.","shortMessageHtmlLink":"Also changing the default plotting linewidth in 'op_plotfid.m' from 1…"}},{"before":"60e5db0c4fc457ce071796895f4cfb65103866eb","after":"0c2caa02e1a793e44a88b299c9316f5b7b38e63e","ref":"refs/heads/master","pushedAt":"2023-12-06T15:47:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Changed the default plotting linewidth in 'op_plotspec.m' from 1.2 to 2 pt.","shortMessageHtmlLink":"Changed the default plotting linewidth in 'op_plotspec.m' from 1.2 to…"}},{"before":"f734140b6889bf57ef2a6e19a45bdd9acf3db891","after":"60e5db0c4fc457ce071796895f4cfb65103866eb","ref":"refs/heads/master","pushedAt":"2023-12-06T15:46:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Added an option in 'op_getSNR.m' to suppress plotting of the results.","shortMessageHtmlLink":"Added an option in 'op_getSNR.m' to suppress plotting of the results."}},{"before":"b1fb75d89c3bb2396361e7f50c90cba9868c5dc3","after":"f734140b6889bf57ef2a6e19a45bdd9acf3db891","ref":"refs/heads/master","pushedAt":"2023-12-06T15:41:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Adding a function called 'op_CSIgetLW.m' for calculating the linewidth of a peak in every voxel of an MRSI dataset.","shortMessageHtmlLink":"Adding a function called 'op_CSIgetLW.m' for calculating the linewidt…"}},{"before":"49099e839fa7ac0f30b1aafab7c084126b398ffb","after":"b1fb75d89c3bb2396361e7f50c90cba9868c5dc3","ref":"refs/heads/master","pushedAt":"2023-12-06T15:38:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Added an option to suppress plots and text output in 'op_getLW.m'.  This will be useful when 'op_getLW.m' is used repeatedly, as in the CSI toolkit function 'op_CSIgetLW.m'.","shortMessageHtmlLink":"Added an option to suppress plots and text output in 'op_getLW.m'. Th…"}},{"before":"0f78748d4650760ddf8b89fc1506bda47a136e79","after":"49099e839fa7ac0f30b1aafab7c084126b398ffb","ref":"refs/heads/master","pushedAt":"2023-12-06T15:29:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Minor fix to the header information in 'op_fourStepCombine.m'.","shortMessageHtmlLink":"Minor fix to the header information in 'op_fourStepCombine.m'."}},{"before":"65825a420d1a3094f4e4137ca482185eb39c90c0","after":"0f78748d4650760ddf8b89fc1506bda47a136e79","ref":"refs/heads/master","pushedAt":"2023-12-06T15:27:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Minor bug fix in 'op_alignAverages_fd.m'.","shortMessageHtmlLink":"Minor bug fix in 'op_alignAverages_fd.m'."}},{"before":"d0a8678d51a4b3876cb66cdaae72923b28c012e9","after":"65825a420d1a3094f4e4137ca482185eb39c90c0","ref":"refs/heads/master","pushedAt":"2023-12-06T15:23:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Minor change to 'DiffTool.fig'.","shortMessageHtmlLink":"Minor change to 'DiffTool.fig'."}},{"before":"8873fd857d7f7c76ceea94751b7bda84989251ea","after":"d0a8678d51a4b3876cb66cdaae72923b28c012e9","ref":"refs/heads/master","pushedAt":"2023-12-06T15:21:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"A few minor changes in 'op_CSISpecReg.m'.","shortMessageHtmlLink":"A few minor changes in 'op_CSISpecReg.m'."}},{"before":"83a5033ed9e2c05853d9427a95f6fd67cb7ac9b5","after":"8873fd857d7f7c76ceea94751b7bda84989251ea","ref":"refs/heads/master","pushedAt":"2023-12-06T15:18:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"In 'io_readlcmraw.m', changed the water frequency from 4.7 ppm to 4.65 ppm to be consistent with the rest of FID-A.","shortMessageHtmlLink":"In 'io_readlcmraw.m', changed the water frequency from 4.7 ppm to 4.6…"}},{"before":"6e7e8139968bc2c39ba10398a71a0871c72b65bb","after":"83a5033ed9e2c05853d9427a95f6fd67cb7ac9b5","ref":"refs/heads/master","pushedAt":"2023-12-06T15:17:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Modified 'io_loadspec_twix.m' so that it can now accept data from Dinesh Deelchand's sLaser sequence ('svs_slaserVOI_dkd2').  As this sequence as the possibillity of automatically collecting water refernce scans within the same scan as the water reference scans, I added an optional output variable 'out_w' for storing the automatically acquired water refernece scans.","shortMessageHtmlLink":"Modified 'io_loadspec_twix.m' so that it can now accept data from Din…"}},{"before":"d9eeec20f77da2510f731c1ad6e3aa6122918990","after":"6e7e8139968bc2c39ba10398a71a0871c72b65bb","ref":"refs/heads/master","pushedAt":"2023-12-06T15:00:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Minor bug fix in 'io_loadspec_rda.m'.","shortMessageHtmlLink":"Minor bug fix in 'io_loadspec_rda.m'."}},{"before":"81e1f7de6cc2f6b1a092edb3d6b50f1fda2dc174","after":"d9eeec20f77da2510f731c1ad6e3aa6122918990","ref":"refs/heads/master","pushedAt":"2023-12-06T14:59:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Modified 'io_CSIload_twix.m' so that the user is no longer promted for the values of Nx, Ny and Nz.  These values are now found automatically in the header.  Specifically, Nx is taken from twix_obj.hdr.MeasYaps.sKSpace.lBaseResolution; Ny is taken from twix_obj.hdr.MeasYaps.sKSpace.pPhaseEncodingLines; and Nz is taken from twix_obj.hdr.MeasYaps.sKSpace.dSliceResolution.","shortMessageHtmlLink":"Modified 'io_CSIload_twix.m' so that the user is no longer promted fo…"}},{"before":"6d138e9823ac822b29bcb41a70834b7dcc02e860","after":"81e1f7de6cc2f6b1a092edb3d6b50f1fda2dc174","ref":"refs/heads/master","pushedAt":"2023-12-06T14:55:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Changed the default RF pulse waveform in 'run_simSteamShaped_fast.m'.","shortMessageHtmlLink":"Changed the default RF pulse waveform in 'run_simSteamShaped_fast.m'."}},{"before":"df61278ab7fff886f203cfcd06c308c6b46c6ae0","after":"6d138e9823ac822b29bcb41a70834b7dcc02e860","ref":"refs/heads/master","pushedAt":"2023-12-06T14:52:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Made a few minor tweaks to the default paramters for the 'run_simSteamShaped.m' simulation tool.","shortMessageHtmlLink":"Made a few minor tweaks to the default paramters for the 'run_simStea…"}},{"before":"77e3fac979b28a03679d6495d2b48d1545e29d4d","after":"df61278ab7fff886f203cfcd06c308c6b46c6ae0","ref":"refs/heads/master","pushedAt":"2023-12-06T14:50:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Converted 'run_simSpinEchoShaped.m' from a script into a function where the one input argument is a metabolite spin system to be simulated.","shortMessageHtmlLink":"Converted 'run_simSpinEchoShaped.m' from a script into a function whe…"}},{"before":"e86ace31be02af9ffe4a08bc71966345d48e0307","after":"77e3fac979b28a03679d6495d2b48d1545e29d4d","ref":"refs/heads/master","pushedAt":"2023-12-06T14:44:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Removed 'peter_analysis.m' from the .gitignore file.","shortMessageHtmlLink":"Removed 'peter_analysis.m' from the .gitignore file."}},{"before":"6d8e03afe42e7f9c25115f6275d313efa9d8ebc4","after":"e86ace31be02af9ffe4a08bc71966345d48e0307","ref":"refs/heads/master","pushedAt":"2023-11-29T19:52:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Fixing a fairly major bug in 'op_addrcvrs.m', which was accidentally introduced on October 23rd, 2023.  The bug caused the units of the coil phase estimate in the 'coilcombos' structure to be incorrect, which caused the coil reconstruction to not work properly whenever 'op_getcoilcombos' was used to feed the 'coilcombos' structure into 'op_addrcvrs'.  The functions 'op_combineRcvrs.m' and most of the example run scripts for data processing (i.e. 'run_pressproc_auto.m', 'run_specialproc_auto.m', etc.), were affected.  The bug has now been fixed, and I also changed all related scripts so that the phase information for all coil combination operations is always stored in degrees.  Likewise, the 'coilcombos' structure now always stores the coil phases in degrees.  If you have done data processing with any of the functions mentioned above using FID-A clones that were made between 23 Oct 2023 and 29 November 2023, then your coil combination will likely have been done incorrectly and I recommend re-doing your processing using this updated version. -Jamie.","shortMessageHtmlLink":"Fixing a fairly major bug in 'op_addrcvrs.m', which was accidentally …"}},{"before":"aa27ce93adc1126fe43abe1499b2498b254fa5fc","after":"6d8e03afe42e7f9c25115f6275d313efa9d8ebc4","ref":"refs/heads/master","pushedAt":"2023-10-23T20:09:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Adding a spin system for hypotaurine (hTau.mat).","shortMessageHtmlLink":"Adding a spin system for hypotaurine (hTau.mat)."}},{"before":"e4f96acb730fb84db790b3d236920f04e9359d3d","after":"aa27ce93adc1126fe43abe1499b2498b254fa5fc","ref":"refs/heads/master","pushedAt":"2023-10-23T10:57:16.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Made a few additional modifications to 'io_loadspec_bruk.m' to improve handling of data from different versions of Bruker data.","shortMessageHtmlLink":"Made a few additional modifications to 'io_loadspec_bruk.m' to improv…"}},{"before":"fe4522c4856f55bb7e4fcb70621ec11c9eb6539b","after":"e4f96acb730fb84db790b3d236920f04e9359d3d","ref":"refs/heads/master","pushedAt":"2023-09-21T03:24:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Made some changes to io_loadspec_bruk.m so that the dims field is correctly set for the water unsuppressed data.","shortMessageHtmlLink":"Made some changes to io_loadspec_bruk.m so that the dims field is cor…"}},{"before":"c516b5deb9869f493dbe4bd7d5a41e51b7779e5b","after":"fe4522c4856f55bb7e4fcb70621ec11c9eb6539b","ref":"refs/heads/master","pushedAt":"2023-09-21T03:09:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Made a minor modification to 'op_median.m' to improve the error handling in the case where the input data structure has no averages.","shortMessageHtmlLink":"Made a minor modification to 'op_median.m' to improve the error handl…"}},{"before":"d425e4483b513870e9d7fe1cfb735876acd91697","after":"c516b5deb9869f493dbe4bd7d5a41e51b7779e5b","ref":"refs/heads/master","pushedAt":"2023-09-21T03:04:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Made a small change to op_averaging, improved the error hadling in cases when the input dataset has no averages.","shortMessageHtmlLink":"Made a small change to op_averaging, improved the error hadling in ca…"}},{"before":"a238cd14e1712d211a0a9ce6905c64f7139abd5c","after":"d425e4483b513870e9d7fe1cfb735876acd91697","ref":"refs/heads/master","pushedAt":"2023-09-20T17:44:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"This is a long-overdue modification to the Bruker load function 'io_loadspec_bruk.m'.  This new version should be able to successfully read PV5, PV6, PV7 and PV360 data.  However, this function was tested on a limited data selection, so there may be cases when it does not work.  I have also committed the original version of 'io_loadspec_bruk.m', but now under the name 'io_loadspec_bruk_old.m', in case some users want access to this old version.  Special thank you to Chathura Kumaragamage and Wendy Oakden for contributing to these codes.","shortMessageHtmlLink":"This is a long-overdue modification to the Bruker load function 'io_l…"}},{"before":"2bd97f67d8da9cbfba15fde38741d2749a2fce7a","after":"a238cd14e1712d211a0a9ce6905c64f7139abd5c","ref":"refs/heads/master","pushedAt":"2023-08-28T16:16:46.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Merge branch 'master' of https://github.com/CIC-methods/FID-A","shortMessageHtmlLink":"Merge branch 'master' of <a href=\"https://github.com/CIC-methods/FID-A\">https://github.com/CIC-methods/FID-A</a>"}},{"before":"4ff0fde82ee741a25df4e0ed08a2a8dbd6ae69d5","after":"2bd97f67d8da9cbfba15fde38741d2749a2fce7a","ref":"refs/heads/master","pushedAt":"2023-08-21T14:05:53.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Merge pull request #110 from hfxcarl/master-1\n\nUpdate GELoad.m to add latest GE Pfile rev30","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1845881835\" data-permission-text=\"Title is private\" data-url=\"https://github.com/CIC-methods/FID-A/issues/110\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/CIC-methods/FID-A/pull/110/hovercard\" href=\"https://github.com/CIC-methods/FID-A/pull/110\">#110</a> from hfxcarl/master-1"}},{"before":"2711d813eec63c2a530a0c5c4102d95441607e0c","after":"4ff0fde82ee741a25df4e0ed08a2a8dbd6ae69d5","ref":"refs/heads/master","pushedAt":"2023-07-31T16:48:29.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Merge pull request #109 from truonp/master\n\nUpdate op_complexConj.m","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1829515995\" data-permission-text=\"Title is private\" data-url=\"https://github.com/CIC-methods/FID-A/issues/109\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/CIC-methods/FID-A/pull/109/hovercard\" href=\"https://github.com/CIC-methods/FID-A/pull/109\">#109</a> from truonp/master"}},{"before":"43927afef0800398ce76efb3c4ce96f05eb4c2b4","after":"2711d813eec63c2a530a0c5c4102d95441607e0c","ref":"refs/heads/master","pushedAt":"2023-07-17T19:20:03.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"jamienear","name":"Jamie Near","path":"/jamienear","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9385793?s=80&v=4"},"commit":{"message":"Merge pull request #107 from truonp/master\n\nUpdate op_complexConj.m","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1805514098\" data-permission-text=\"Title is private\" data-url=\"https://github.com/CIC-methods/FID-A/issues/107\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/CIC-methods/FID-A/pull/107/hovercard\" href=\"https://github.com/CIC-methods/FID-A/pull/107\">#107</a> from truonp/master"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADwuDtRQA","startCursor":null,"endCursor":null}},"title":"Activity · CIC-methods/FID-A"}