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In the past our BFX team has made batch submissions to repositories like GISAID. Does seqsender support batch submissions to the other repositories via e.g. concatenating the FASTAs? If so how do we handle the batch submission of FASTQ files to SRA? Can we specify a value of "cloud" in the SRA_file_location, and then just provide an s3 directory for the SRA_file_column1 and SRA_file_column2 fields?
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In the past our BFX team has made batch submissions to repositories like GISAID. Does seqsender support batch submissions to the other repositories via e.g. concatenating the FASTAs? If so how do we handle the batch submission of FASTQ files to SRA? Can we specify a value of "cloud" in the
SRA_file_location
, and then just provide an s3 directory for theSRA_file_column1
andSRA_file_column2
fields?Beta Was this translation helpful? Give feedback.
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