{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":173138251,"defaultBranch":"master","name":"BiaPy","ownerLogin":"BiaPyX","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-02-28T15:35:09.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/156199480?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1717679226.0","currentOid":""},"activityList":{"items":[{"before":"5e81b4deec431d29d3d8d575f091653278e1e574","after":"089a945fb64eb0e2f41b4637df156d4e298d21ae","ref":"refs/heads/master","pushedAt":"2024-06-10T08:50:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Update notebooks with new cells for BMZ connection","shortMessageHtmlLink":"Update notebooks with new cells for BMZ connection"}},{"before":"39b28d240089ee3d934e0686b3667c3a22756c08","after":"5e81b4deec431d29d3d8d575f091653278e1e574","ref":"refs/heads/master","pushedAt":"2024-06-06T14:46:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Increase robustness during BMZ model compatibility with the problem at hand","shortMessageHtmlLink":"Increase robustness during BMZ model compatibility with the problem a…"}},{"before":"cba02eae3da87ca7640196fc4bf074600a05f49e","after":"39b28d240089ee3d934e0686b3667c3a22756c08","ref":"refs/heads/master","pushedAt":"2024-06-06T11:54:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Change BMZ interaction to allow training using BiaPy's normalization","shortMessageHtmlLink":"Change BMZ interaction to allow training using BiaPy's normalization"}},{"before":"3bde742059f87adb4bbfd9f85a7037f474af1f11","after":"cba02eae3da87ca7640196fc4bf074600a05f49e","ref":"refs/heads/master","pushedAt":"2024-06-05T16:23:34.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Add pooch as a dependency","shortMessageHtmlLink":"Add pooch as a dependency"}},{"before":"2950565fbe97db0512487f4b49925bfad933359b","after":"3bde742059f87adb4bbfd9f85a7037f474af1f11","ref":"refs/heads/master","pushedAt":"2024-06-05T10:10:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Improve image and it corresponding gt file matching in instance seg. workflow","shortMessageHtmlLink":"Improve image and it corresponding gt file matching in instance seg. …"}},{"before":"79fe3b17a3fb6b723b2e0f415a721a15c49c1e6e","after":"2950565fbe97db0512487f4b49925bfad933359b","ref":"refs/heads/master","pushedAt":"2024-06-04T09:48:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Update notebooks with the new version","shortMessageHtmlLink":"Update notebooks with the new version"}},{"before":"33f727a2cf0a87baf85db4be9c054964ff20999e","after":"79fe3b17a3fb6b723b2e0f415a721a15c49c1e6e","ref":"refs/heads/master","pushedAt":"2024-06-04T09:41:46.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Adapting code to train with BMZ models and solve minor problems","shortMessageHtmlLink":"Adapting code to train with BMZ models and solve minor problems"}},{"before":"26a63d76d1bb21db36835cc74b747d090c67ba57","after":"33f727a2cf0a87baf85db4be9c054964ff20999e","ref":"refs/heads/master","pushedAt":"2024-05-23T08:59:23.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Fix minor error when predicting multi-channel data using Zarr","shortMessageHtmlLink":"Fix minor error when predicting multi-channel data using Zarr"}},{"before":"a3bac956929b07fcc1571a2fd592bccf15e9ac9d","after":"26a63d76d1bb21db36835cc74b747d090c67ba57","ref":"refs/heads/master","pushedAt":"2024-05-23T07:25:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Add SYSTEM.DEVICE option to allow other backends apart from cpu","shortMessageHtmlLink":"Add SYSTEM.DEVICE option to allow other backends apart from cpu"}},{"before":"e1782c7b63fda4ba4986bcb4c54519b6d22a6ec2","after":"a3bac956929b07fcc1571a2fd592bccf15e9ac9d","ref":"refs/heads/master","pushedAt":"2024-05-21T06:23:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Fix bug in per patch loss/IoU calculation with batch size > 1","shortMessageHtmlLink":"Fix bug in per patch loss/IoU calculation with batch size &gt; 1"}},{"before":"33564b77748bbf1e5ff85e0880904cefd3ba0341","after":"1b3609023204eccfdae0d08e458ae65545000d0d","ref":"refs/heads/instance-dev","pushedAt":"2024-05-21T06:16:02.000Z","pushType":"push","commitsCount":8,"pusher":{"login":"iarganda","name":"Ignacio Arganda-Carreras","path":"/iarganda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4041131?s=80&v=4"},"commit":{"message":"Merge branch 'master' into instance-dev","shortMessageHtmlLink":"Merge branch 'master' into instance-dev"}},{"before":"f8a8b404f2c149dd25ff3d1466d81f60525e0409","after":"e1782c7b63fda4ba4986bcb4c54519b6d22a6ec2","ref":"refs/heads/master","pushedAt":"2024-05-20T13:22:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Add I2I notebooks","shortMessageHtmlLink":"Add I2I notebooks"}},{"before":"5b87cfb1d5ede9f06ab25a9eb275c9e204502532","after":"f8a8b404f2c149dd25ff3d1466d81f60525e0409","ref":"refs/heads/master","pushedAt":"2024-05-20T07:00:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Add I2I workflow templates","shortMessageHtmlLink":"Add I2I workflow templates"}},{"before":"e26e1d4575a95bfcb5e5cdb574b5bbc7310fc17d","after":"5b87cfb1d5ede9f06ab25a9eb275c9e204502532","ref":"refs/heads/master","pushedAt":"2024-05-18T18:52:48.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"XMerge branch 'master' of github.com:BiaPyX/BiaPy","shortMessageHtmlLink":"XMerge branch 'master' of github.com:BiaPyX/BiaPy"}},{"before":"d8a66603b605f9e4cbf81886e76bdb746ea2efa3","after":"e26e1d4575a95bfcb5e5cdb574b5bbc7310fc17d","ref":"refs/heads/master","pushedAt":"2024-05-17T12:38:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"iarganda","name":"Ignacio Arganda-Carreras","path":"/iarganda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4041131?s=80&v=4"},"commit":{"message":"Update notebook with new IoU chart.\n\nFor now, it shows the Jaccard of the B channel.","shortMessageHtmlLink":"Update notebook with new IoU chart."}},{"before":"a3702fdae3dd95006e99f1df8d1814647d561230","after":"d8a66603b605f9e4cbf81886e76bdb746ea2efa3","ref":"refs/heads/master","pushedAt":"2024-05-17T05:40:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"iarganda","name":"Ignacio Arganda-Carreras","path":"/iarganda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4041131?s=80&v=4"},"commit":{"message":"Update notebook with new Jaccard index chart.\n\nTODO: Decide if we want to visualize the charts of all channels.","shortMessageHtmlLink":"Update notebook with new Jaccard index chart."}},{"before":"a8a5a5d30ec057181eac3df6b8de5e7582523c46","after":"33564b77748bbf1e5ff85e0880904cefd3ba0341","ref":"refs/heads/instance-dev","pushedAt":"2024-05-16T09:49:31.000Z","pushType":"push","commitsCount":9,"pusher":{"login":"iarganda","name":"Ignacio Arganda-Carreras","path":"/iarganda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4041131?s=80&v=4"},"commit":{"message":"Merge branch 'master' into instance-dev","shortMessageHtmlLink":"Merge branch 'master' into instance-dev"}},{"before":"5615e920ff6ffd6f8ecebd800904c7110e738804","after":"a3702fdae3dd95006e99f1df8d1814647d561230","ref":"refs/heads/master","pushedAt":"2024-05-15T07:31:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Update notebooks with the upcoming version","shortMessageHtmlLink":"Update notebooks with the upcoming version"}},{"before":"858d774d509db096f3a516c1df410bf25838328e","after":"5615e920ff6ffd6f8ecebd800904c7110e738804","ref":"refs/heads/master","pushedAt":"2024-05-15T06:34:42.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Merge branch 'master' of github.com:BiaPyX/BiaPy","shortMessageHtmlLink":"Merge branch 'master' of github.com:BiaPyX/BiaPy"}},{"before":"e6546e99e03dc667def7c4da5da67ef1fcb83bcf","after":"858d774d509db096f3a516c1df410bf25838328e","ref":"refs/heads/master","pushedAt":"2024-05-14T16:14:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Add lightmycells_pretraining YAML file","shortMessageHtmlLink":"Add lightmycells_pretraining YAML file"}},{"before":"bfd63c0dbe97fa1808f4b76d50dc5e45696dcb9b","after":"e6546e99e03dc667def7c4da5da67ef1fcb83bcf","ref":"refs/heads/master","pushedAt":"2024-05-14T15:12:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Add new checks and useful messages for end users","shortMessageHtmlLink":"Add new checks and useful messages for end users"}},{"before":"4c4098401be061c65ab11914d1eeaec4212160b5","after":"bfd63c0dbe97fa1808f4b76d50dc5e45696dcb9b","ref":"refs/heads/master","pushedAt":"2024-05-14T14:13:43.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Merge pull request #83 from ClementCaporal/patch-1\n\nFix outdata_shape when C is not last dimension","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2295316994\" data-permission-text=\"Title is private\" data-url=\"https://github.com/BiaPyX/BiaPy/issues/83\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/BiaPyX/BiaPy/pull/83/hovercard\" href=\"https://github.com/BiaPyX/BiaPy/pull/83\">#83</a> from ClementCaporal/patch-1"}},{"before":"ba90b4823ac28a692351a8df90132b71a8a01109","after":"a8a5a5d30ec057181eac3df6b8de5e7582523c46","ref":"refs/heads/instance-dev","pushedAt":"2024-05-14T12:34:41.000Z","pushType":"push","commitsCount":75,"pusher":{"login":"iarganda","name":"Ignacio Arganda-Carreras","path":"/iarganda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4041131?s=80&v=4"},"commit":{"message":"Merge branch 'master' into instance-dev","shortMessageHtmlLink":"Merge branch 'master' into instance-dev"}},{"before":"85e15349757aad6dbc025e9fcf02bff60c0f730d","after":"ba90b4823ac28a692351a8df90132b71a8a01109","ref":"refs/heads/instance-dev","pushedAt":"2024-05-14T10:49:06.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"iarganda","name":"Ignacio Arganda-Carreras","path":"/iarganda","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/4041131?s=80&v=4"},"commit":{"message":"Use minimum between all affinities to run watershed","shortMessageHtmlLink":"Use minimum between all affinities to run watershed"}},{"before":"7e8a7ffe1a71380ce88951a587a504d0e4b93379","after":"4c4098401be061c65ab11914d1eeaec4212160b5","ref":"refs/heads/master","pushedAt":"2024-05-14T09:23:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Add preprocessing into classification and solve a few bugs during cross validation","shortMessageHtmlLink":"Add preprocessing into classification and solve a few bugs during cro…"}},{"before":"4b5a00e715863889a4435146466f11d54d47eabd","after":"7e8a7ffe1a71380ce88951a587a504d0e4b93379","ref":"refs/heads/master","pushedAt":"2024-05-09T17:52:51.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Adapt MAE's grid mask to be operative in 3D","shortMessageHtmlLink":"Adapt MAE's grid mask to be operative in 3D"}},{"before":"9001627e016fbac553e7220fa796afd0a8df17a4","after":"4b5a00e715863889a4435146466f11d54d47eabd","ref":"refs/heads/master","pushedAt":"2024-05-09T11:54:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Restrict 'PROBLEM.SELF_SUPERVISED.PRETEXT_TASK' to masking when using mae to avoid confusions","shortMessageHtmlLink":"Restrict 'PROBLEM.SELF_SUPERVISED.PRETEXT_TASK' to masking when using…"}},{"before":"4f8ef9e3817a7efe952ddd2ab1418da41883bce0","after":"9001627e016fbac553e7220fa796afd0a8df17a4","ref":"refs/heads/master","pushedAt":"2024-05-08T17:53:00.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"mend","shortMessageHtmlLink":"mend"}},{"before":"598d93b839c21b56c228a9ce44d4def9c4e2214a","after":"4f8ef9e3817a7efe952ddd2ab1418da41883bce0","ref":"refs/heads/master","pushedAt":"2024-05-06T19:07:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Avoid stuck processes to jump into inference phase in multi-gpu configuration when setting patience during training","shortMessageHtmlLink":"Avoid stuck processes to jump into inference phase in multi-gpu confi…"}},{"before":"fc75fe76dae753ab8e1199b11590018a8fbdd395","after":"598d93b839c21b56c228a9ce44d4def9c4e2214a","ref":"refs/heads/master","pushedAt":"2024-05-06T18:56:50.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"danifranco","name":"Daniel Franco-Barranco","path":"/danifranco","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32868330?s=80&v=4"},"commit":{"message":"Avoid evaluation in detection if no points are created","shortMessageHtmlLink":"Avoid evaluation in detection if no points are created"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEYOK_rQA","startCursor":null,"endCursor":null}},"title":"Activity · BiaPyX/BiaPy"}