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setup.py
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setup.py
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"""A setuptools based setup module.
See:
https://packaging.python.org/en/latest/distributing.html
https://github.com/pypa/sampleproject
"""
from os.path import join
from setuptools import find_packages
from setuptools import setup
from src.patteRNA.version import __version__
# Get the long description from the README file
with open(join("README.md")) as f:
long_description = f.read()
setup(
name="patteRNA",
version=__version__,
description="Rapid mining of RNA secondary structure motifs from profiling data.",
long_description=long_description,
url="https://github.com/AviranLab/patteRNA",
author="Pierce Radecki",
author_email="peradecki@ucdavis.edu",
license="BSD-2",
keywords="RNA structure mining",
# See https://pypi.python.org/pypi?%3Aaction=list_classifiers
classifiers=[
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Science/Research",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"License :: OSI Approved :: BSD License",
"Programming Language :: Python :: 3 :: Only"
],
# Python requirements
python_requires=">=3",
# Specify source packages
packages=find_packages('src'),
package_dir={'': 'src'},
# Dependencies
install_requires=[
"exrex",
"humanfriendly",
"numpy",
"matplotlib",
"tqdm",
"scikit-learn",
"scipy",
],
# Include data files
package_data={
"sample_data": ["sample_data/*"],
},
# Create the executable
entry_points={
'console_scripts': [
'patteRNA = patteRNA.cli:main'
]
},
zip_safe=False
)