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Missing windows in thetaStat #618

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jbruxaux opened this issue Apr 19, 2024 · 0 comments
Open

Missing windows in thetaStat #618

jbruxaux opened this issue Apr 19, 2024 · 0 comments

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@jbruxaux
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Hi!

I want to estimate Tajima's D by non-overlapping windows of 1Mb, and when I run this command line:

thetaStat do_stat file.thetas.idx -win 1000000 -step 1000000 -outnames file

Then my first and last windows are always missing (the one from 0 to 1000000, and the one at the end of the chromosome).

Is there any way to solve this?

Thanks!
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@jbruxaux