Segmentation Fault

[ciselkemahli]

Hello,

I got the segmentation fault problem when I ran the below code. It reads all the bam files in the bamlist correctly. (The ANGSD version 0.929) When I removed doVcf and doPost with it, the problem was gone, and it worked properly. There can be a bug or something; I do not know, so I want to let you know. Thank you.

~/bin/angsd/angsd -b $pop -out output -ref $ref -GL 1 -doMajorMinor 1 -doMaf 1 -doGlf 3 -minInd $mInd -SNP_pval 1e-6 -minmaf 0.05 -nThreads 8 -minMapQ 10 -minQ 20 -doCounts 1 -doVcf 1 -doPost 1 -setMinDepthInd 6

[ANGSD]

Dear Cisel, please try the newest version if the software. Best regards

…

On 29 Jan 2024, at 10.09, Çisel Kemahlı ***@***.***> wrote: Hello, I got the segmentation fault problem when I ran the below code. It reads all the bam files in the bamlist correctly. (The ANGSD version 0.929) When I removed doVcf and doPost with it, the problem was gone, and it worked properly. There can be a bug or something; I do not know, so I want to let you know. Thank you. ~/bin/angsd/angsd -b $pop -out output -ref $ref -GL 1 -doMajorMinor 1 -doMaf 1 -doGlf 3 -minInd $mInd -SNP_pval 1e-6 -minmaf 0.05 -nThreads 8 -minMapQ 10 -minQ 20 -doCounts 1 -doVcf 1 -doPost 1 -setMinDepthInd 6 — Reply to this email directly, view it on GitHub <#612>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABQOR3QGHAVMPSHZ562VFT3YQ5RN3AVCNFSM6AAAAABCPBXKD2VHI2DSMVQWIX3LMV43ASLTON2WKOZSGEYDKMBQGE3TGOA>. You are receiving this because you are subscribed to this thread.