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Hello, I'm calling pseudohaploid genotype calls by randomly sampling a single read per position (./angsd -dohaplocall 1 -doCounts 1). This runs well, but always samples the same reads and we would like to understand variability between sampling iterations. I have tried to change the random seed by adding -seed X (where X is 1-5) to the code, but it still produces identical outputs. Is there another way to change the random seed? Thank you for your help!
The text was updated successfully, but these errors were encountered:
Hello, I'm calling pseudohaploid genotype calls by randomly sampling a single read per position (
./angsd -dohaplocall 1 -doCounts 1
). This runs well, but always samples the same reads and we would like to understand variability between sampling iterations. I have tried to change the random seed by adding-seed X
(where X is 1-5) to the code, but it still produces identical outputs. Is there another way to change the random seed? Thank you for your help!The text was updated successfully, but these errors were encountered: