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Unable to change the random seed for haploid genotype calling with doCounts/dohaplocall? #596

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TaurVil opened this issue Sep 13, 2023 · 0 comments

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@TaurVil
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TaurVil commented Sep 13, 2023

Hello, I'm calling pseudohaploid genotype calls by randomly sampling a single read per position (./angsd -dohaplocall 1 -doCounts 1). This runs well, but always samples the same reads and we would like to understand variability between sampling iterations. I have tried to change the random seed by adding -seed X (where X is 1-5) to the code, but it still produces identical outputs. Is there another way to change the random seed? Thank you for your help!

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