abcWriteVcf.h

class abcWriteVcf:public abc{
private:
  BGZF *fp;
  kstring_t *kstr;
  char* refName;
  char* ancName;
  int doPost;
  int doMajorMinor;
  int gl;
  int doMaf;
  int doCounts;
  int doGeno;
public:
  int doVcf;
  abcWriteVcf(const char *outfiles,argStruct *arguments,int inputtype);
  ~abcWriteVcf();
  void getOptions(argStruct *arguments);
  void run(funkyPars  *pars);
  void clean(funkyPars *pars);
  void print(funkyPars *pars);
  void printArg(FILE *argFile);
};