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[feature] : Metadata in Outputs #797
Comments
Moving chats from #778 to here:
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I feel it is something that should be prioritised as we should strive to adhere to the FAIR Principles which cover including Metadata not just describing the dataset but the data within it. Specifically principle R1 (my emphasis)
Much of this metadata is in the files we read ( |
Given the issue as reported is the metadata is not saved in the TIFF files then it would, to my mind, be logical to save it in the TIFF file so it is available for downstream processing in other software. Of course saving it in the HDF5 would also be desirable, and I think to save going round in circles as we have done here with "adding TIFF output" and a sub-optimal quick fix solution that didn't include the PIL solution which allows inclusion of metdata it would be sensible to put all metadata that is available into both TIFF and HDF5 as it avoids having to revisit the issue and add another field in when a user decides that they want it available in The ability to use PIL as an output for image formats is independent of what metadata to include so I'll split this into two issues. |
Is your feature request related to a problem?
Metadata such as the real lengths of an image are not currently saved in the Tiff files, this makes downstream analysis in other software like imageJ include an extra step where I need to manually input these parameters.
Describe the solution you would like.
The lengths of the tiff images when opened in ImageJ to have correct lengths (not just pixels)
Describe the alternatives you have considered.
Another file format compatible with ImageJ
Issues
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