SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
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Updated
Jun 1, 2024 - C++
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
Toolkit for open antiviral drug discovery by the ASAP Discovery Consortium
UCSC Genome Browser source tree. Stable branch: "beta".
The Open Drug Design Pipeline project leverages advanced AI models to re-think an AI first approach to drug discovery
Top Life Sciences open-source software
Implementations of various simulations for integrate and fire models, as well as conductance based models with synaptic neurotransmission
Infectious Disease Sequencing Platform
An FPGA design for simulating biological neurons
A Go package for designing DNA.
A comprehensive library for computational molecular biology
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
A Python package for the Scalale and accurate identification condition-relevant niches from spatial -omics data.
Advanced bioinformatics analysis of RNA sequencing data and genomic databases using R. Explore allelic imbalances, SNP variants, and phylogenetic trees to uncover genetic insights and visualize complex data interactions.
Docker images for the running the HADDOCK system for predicting the structure of biomolecular complexes.
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
Source code for Tabula Rasa lab website
Python library for reading, writing, and converting computational chemistry file formats and generating input files.
forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research
KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.
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