Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
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Updated
Oct 12, 2023 - Python
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
A simple command-line tool to download data from Joint Genome Institute databases
Scripts and procedures for detecting positively selected genes and codons in primates
Repository for the TRANSIT and TPP tools developed by the Ioerger Lab
GENA-LM is a transformer masked language model trained on human DNA sequence.
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, dire…
A modern genomics framework for julia
The first app for Mobile DNA Sequence Alignment and Analysis
A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with Sequence Bloom Trees
Unified PHYling pipeline for species tree building from annotated genomes (see https://github.com/stajichlab/AAFTF and https://github.com/nextgenusfs/funannotate for assembly and annotation steps)
Teaching materials for SymbNET course: from MAGs to GEMs
Pipeline in place at the UGI for DNA level analysis
This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"
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