Scans fasta sequences for putative viruses - uses prokka, blast, and hhpred to predict ORFs and gene products
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Updated
Apr 11, 2017 - Python
Scans fasta sequences for putative viruses - uses prokka, blast, and hhpred to predict ORFs and gene products
Genome Annotation for the Masses
Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS
Prediction of metastasis sites for breast cancer cells
automatically create GLIMMER training materials from GenBank records
Pipelines for gene and TE annotation of pangenomes.
Cpp Programs for feature extraction
Gene Prediction Meta Server is a project that aims to bring multiple offline gene prediction tools online and integrating them into a single online platform in a user-friendly way. The related video link is attached.
scripts associated with yam genome assembly
This project deals with predicting the location of a gene in the human genome based off experimental data
EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
Scalable high-throughput short-read open reading frame prediction
Using un-assembled genome sequence data from the Centers for Disease Control and Prevention (CDC) proceed through five distinct stages of analysis and interpretation of that data: 1-genome assembly, 2-gene prediction, 3-functional annotation, 4-comparative genomics and 5-production of a predictive webserver.
Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.
iPat allows you to perform GWAS and GS with drags and clicks!
Prediction of genes in genomes with ambiguous stop codons
Python3 wrapper for parallelized gene prediction using Prodigal
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