FASTA file parser to extract or pipeline amino acid sequences.
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Updated
Sep 8, 2017 - C
FASTA file parser to extract or pipeline amino acid sequences.
ECS 124 - Theory and Practice of Bioinformatics
Bioinformatics
A short script for searching in Uniprot using RESTful APIs
Create required reference genome index files for WGS data analysis
An easy fragment of code to read in fasta format files
Python Tools for Computational Molecular Biology
StretchFinder is a tool that helps to analyze the codon composition in genomes. It has the basic pipelines needed in order to draw preliminary conclusions about the codon usage and composition of genomes.
perform interval queries on an indexed fasta file
An implementation of the Jukes-Cantor algorithm for Homework Assignment 5 in MCS 5603.
Expanded version of the traditional Smith Waterman algorithm for local alignment
A collection of short and sweet python scripts I wrote for my dad that automate steps in the analysis of fasta files.
XSLT file to transform a UniProt proteome XML file to a protein fasta file for Prokka
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