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mkdocs.yml
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mkdocs.yml
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---
site_name: The brain imaging data structure
repo_url: https://github.com/bids-standard/bids-website.git
site_url: https://bids-website.readthedocs.io
plugins:
- search
- tags
# - social
- blog
# - rss:
# match_path: blog/posts/.*
# date_from_meta:
# as_creation: date
# categories:
# - categories
# - tags
- macros:
module_name: macros/main
docs_dir: docs
exclude_docs: |
.github
apps/README.md
apps/apps.md
apps/dev_faq.md
execution/README.md
execution/BIDS_logo/README.md
execution/src/CONTRIBUTING.md
extensions/README.md
extensions/docs/faq.md
starter_kit/README.md
starter_kit/matlabCode/general/README.md
starter_kit/reports/
starter_kit/CODE_OF_CONDUCT.md
starter_kit/CONTRIBUTING.md
starter_kit/src/FAQ.md
starter_kit/src/contact.md
starter_kit/src/tutorials/media/README.md
starter_kit/src/validator.md
stats_models/README.md
stats_models/bsmschema/README.md
stats_models/specification/walkthrough-2.md
nav:
- index.md
- Standards:
- standards/index.md
- BIDS schema:
- extensions/docs/schema.md
- how it works:
- extensions/docs/how-the-schema-works.md
- metadata: extensions/docs/schema_meta.md
- objects: extensions/docs/schema_objects.md
- rules: extensions/docs/schema_rules.md
- details:
- specification/schema/README.md
- BIDS stats model:
- stats_models/specification/index.md
- motivations: stats_models/specification/motivation.md
- walkthrough:
- stats_models/specification/walkthrough-intro.md
- part-1: stats_models/specification/walkthrough-1.md
- integration: stats_models/specification/integration.md
- legacy: stats_models/specification/legacy.md
- specification:
- stats_models/specification/spec.md
- reference: stats_models/specification/reference.md
- examples and resources:
- stats_models/specification/model-zoo.md
- default model: stats_models/specification/default_model.md
- variable transforms:
- variable-transform/README.md
- compute: variable-transform/spec/compute.md
- munge: variable-transform/spec/munge.md
- BIDS app specification:
- execution/src/index.md
- scope: execution/src/scope.md
- specification:
- execution/src/specification.md
- user interface: execution/src/ui.md
- inputs: execution/src/inputs.md
- outputs: execution/src/outputs.md
- examples: execution/src/examples.md
- release notes: execution/src/CHANGELOG.md
- Tools:
- tools/index.md
- Validator: tools/validator.md
- Converters:
- tools/converters/index.md
- MRI and PET: tools/converters/mri-pet.md
- MEEG: tools/converters/meeg.md
- physio: tools/converters/physio.md
- others: tools/converters/others.md
- BIDS apps:
- apps/about.md
- tutorial: apps/tutorial.md
- dashboard: tools/apps/dashboard.md
- Others: tools/others.md
- Collaboration:
- Governance: collaboration/governance.md
- Code of conduct:
- specification: specification/CODE_OF_CONDUCT.md
- starter_kit: starter_kit/src/CODE_OF_CONDUCT.md
- contributing:
- apps: apps/CONTRIBUTING.md
- spec: specification/CONTRIBUTING.md
- starter_kit: starter_kit/src/CONTRIBUTING.md
- Acknowledgments: collaboration/acknowledgments.md
- Getting started:
- starter_kit/src/index.md
- folders and files:
- folders: starter_kit/src/folders_and_files/folders.md
- files: starter_kit/src/folders_and_files/files.md
- metadata: starter_kit/src/folders_and_files/metadata.md
- json_101: stats_models/specification/json_101.md
- derivatives: starter_kit/src/folders_and_files/derivatives.md
- tutorials:
- starter_kit/src/tutorials/tutorials.md
- conversion:
- asl: starter_kit/src/tutorials/asl.md
- ieeg: starter_kit/src/tutorials/ieeg.md
- mri: starter_kit/src/tutorials/mri.md
- pet: starter_kit/src/tutorials/pet.md
- annotation: starter_kit/src/tutorials/annotation.md
- resources:
- starter_kit/src/links.md
- talks: starter_kit/src/talks.md
- publications: starter_kit/src/publications.md
- dependencies: starter_kit/src/dependencies.md
- glossary: starter_kit/src/glossary.md
- Datasets:
- starter_kit/src/dataset_examples.md
- examples: examples/README.md
- Extensions:
- bep/index.md
- BEPs: bep/beps.md
- intro: extensions/docs/index.md
- general_guidelines: extensions/docs/general_guidelines.md
- guide: extensions/docs/guide.md
- submission: extensions/docs/submission.md
- macros: specification/macros_doc.md
- FAQ:
- faq/index.md
- general: faq/general.md
- eeg: faq/eeg.md
- mri: faq/mri.md
- phenotype: faq/pheno.md
- bids extensions: faq/bep.md
- bids apps: faq/apps.md
- Blog:
- blog/index.md
- Impact:
- grant-writing-kit.md
- Contact: contact.md
- Merch: merch.md
theme:
name: material
custom_dir: docs/overrides
favicon: assets/favicon/favicon.ico
logo: assets/img/logos/logo.png
features:
- announce.dismiss
- content.action.edit
- content.tooltips
- footnotes
- header.autohide
- navigation.footer
- navigation.indexes
- navigation.instant
- navigation.path
- navigation.sections
- navigation.tabs
- navigation.tabs.sticky
- navigation.top
- search.suggest
- search.highlight
- toc.follow
icon:
repo: fontawesome/brands/github
edit: material/pencil
annotation: material/arrow-right-circle
palette:
- media: (prefers-color-scheme)
toggle:
icon: material/brightness-auto
name: Switch to light mode
- media: '(prefers-color-scheme: light)'
primary: light green
accent: green
scheme: default
toggle:
icon: material/brightness-7
name: Switch to dark mode
- media: '(prefers-color-scheme: dark)'
primary: teal
accent: green
scheme: slate
toggle:
icon: material/brightness-4
name: Switch to system preference
edit_uri: https://github.com/bids-standard/bids-extensions/edit/main/docs/
markdown_extensions:
- abbr
- admonition
- attr_list
- md_in_html
- pymdownx.details
- pymdownx.emoji:
emoji_generator: !!python/name:material.extensions.emoji.to_svg
emoji_index: !!python/name:material.extensions.emoji.twemoji
- pymdownx.snippets:
auto_append:
- includes/abbreviations.md
- pymdownx.superfences:
custom_fences:
- name: mermaid
class: mermaid
format: !!python/name:pymdownx.superfences.fence_code_format
- tables
- toc:
anchorlink: true
extra_javascript:
- https://unpkg.com/tablesort@5.3.0/dist/tablesort.min.js
- javascripts/tablesort.js
extra_css:
- stylesheets/extra.css
watch:
- includes
copyright: Copyright © BIDS Contributors - <a href="https://creativecommons.org/licenses/by/4.0/">CC BY 4.0</a>
extra:
generator: false
social:
- icon: fontawesome/brands/x-twitter
link: https://x.com/BIDSstandard/
- icon: fontawesome/brands/mastodon
link: https://fosstodon.org/@bidsstandard
- icon: simple/bluesky
link: https://bsky.app/profile/bidsstandard.bsky.social/
- icon: fontawesome/brands/google
link: https://groups.google.com/g/bids-discussion
- icon: fontawesome/brands/instagram
link: https://www.instagram.com/bidsstandard/
- icon: fontawesome/brands/youtube
link: https://www.youtube.com/channel/UCxZUcYfd_nvIVWAbzRB1tlw