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mkdocs.yml
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site_name: Brain Imaging Data Structure 1.10.0-dev
site_url: https://bids-specification.readthedocs.io/en/stable/
repo_url: https://github.com/bids-standard/bids-specification
nav:
- The BIDS Specification:
- Introduction: introduction.md
- Common principles: common-principles.md
- Modality agnostic files: modality-agnostic-files.md
- Modality specific files:
- Magnetic Resonance Imaging: modality-specific-files/magnetic-resonance-imaging-data.md
- Magnetoencephalography: modality-specific-files/magnetoencephalography.md
- Electroencephalography: modality-specific-files/electroencephalography.md
- Intracranial Electroencephalography: modality-specific-files/intracranial-electroencephalography.md
- Task events: modality-specific-files/task-events.md
- Physiological recordings: modality-specific-files/physiological-recordings.md
- Behavioral experiments (with no neural recordings): modality-specific-files/behavioral-experiments.md
- Genetic Descriptor: modality-specific-files/genetic-descriptor.md
- Positron Emission Tomography: modality-specific-files/positron-emission-tomography.md
- Microscopy: modality-specific-files/microscopy.md
- Near-Infrared Spectroscopy: modality-specific-files/near-infrared-spectroscopy.md
- Motion: modality-specific-files/motion.md
- Derivatives:
- BIDS Derivatives: derivatives/introduction.md
- Common data types and metadata: derivatives/common-data-types.md
- Imaging data types: derivatives/imaging.md
- Longitudinal and multi-site studies: longitudinal-and-multi-site-studies.md
- Glossary: glossary.md
- BIDS Extension Proposals: extensions.md
- Appendix:
- Schema: appendices/schema.md
- Contributors: appendices/contributors.md
- Licenses: appendices/licenses.md
- Entity table: appendices/entity-table.md
- Entities: appendices/entities.md
- File collections: appendices/file-collections.md
- Units: appendices/units.md
- Hierarchical Event Descriptors: appendices/hed.md
- MEG file formats: appendices/meg-file-formats.md
- MEG systems: appendices/meg-systems.md
- Coordinate systems: appendices/coordinate-systems.md
- Quantitative MRI: appendices/qmri.md
- Arterial Spin Labeling: appendices/arterial-spin-labeling.md
- Cross modality correspondence: appendices/cross-modality-correspondence.md
- Changelog: CHANGES.md
- The BIDS Starter Kit:
- Website: https://bids-standard.github.io/bids-starter-kit/
- Tutorials: https://bids-standard.github.io/bids-starter-kit/tutorials/tutorials.html
- GitHub repository: https://github.com/bids-standard/bids-starter-kit
theme:
name: material
favicon: images/favicon.png
logo: images/logo.png
features:
- navigation.sections
- content.action.edit
icon:
repo: fontawesome/brands/github
edit: material/pencil
palette:
# Palette toggle for automatic mode
- media: (prefers-color-scheme)
toggle:
icon: material/brightness-auto
name: Switch to light mode
# Palette toggle for light mode
- media: "(prefers-color-scheme: light)"
scheme: default
toggle:
icon: material/brightness-7
name: Switch to dark mode
# Palette toggle for dark mode
- media: "(prefers-color-scheme: dark)"
scheme: slate
toggle:
icon: material/brightness-4
name: Switch to system preference
edit_uri: https://github.com/bids-standard/bids-specification/edit/master/src/
copyright: Copyright © BIDS Contributors - <a href="https://creativecommons.org/licenses/by/4.0/">CC BY 4.0</a>
extra:
generator: false
social:
- icon: fontawesome/brands/github
link: https://github.com/bids-standard/bids-specification/
- icon: fontawesome/brands/x-twitter
link: https://x.com/BIDSstandard/
- icon: fontawesome/brands/mastodon
link: https://fosstodon.org/@bidsstandard
- icon: fontawesome/brands/google
link: https://groups.google.com/g/bids-discussion
- icon: fontawesome/brands/instagram
link: https://www.instagram.com/bidsstandard/
- icon: fontawesome/brands/youtube
link: https://www.youtube.com/channel/UCxZUcYfd_nvIVWAbzRB1tlw
extra_javascript:
- js/jquery-3.6.0.min.js
markdown_extensions:
- toc:
anchorlink: true
- pymdownx.superfences
- admonition
- pymdownx.details
plugins:
- search
- branchcustomization:
update_config:
- branch: /(?!^master$)/
+extra_css:
- css/watermark.css
- macros:
module_name: tools/mkdocs_macros_bids/main
- redirects:
redirect_maps:
"01-introduction.md": "introduction.md"
"02-common-principles.md": "common-principles.md"
"03-modality-agnostic-files.md": "modality-agnostic-files.md"
"04-modality-specific-files/01-magnetic-resonance-imaging-data.md": "modality-specific-files/magnetic-resonance-imaging-data.md"
"04-modality-specific-files/02-magnetoencephalography.md": "modality-specific-files/magnetoencephalography.md"
"04-modality-specific-files/03-electroencephalography.md": "modality-specific-files/electroencephalography.md"
"04-modality-specific-files/04-intracranial-electroencephalography.md": "modality-specific-files/intracranial-electroencephalography.md"
"04-modality-specific-files/05-task-events.md": "modality-specific-files/task-events.md"
"04-modality-specific-files/06-physiological-and-other-continuous-recordings.md": "modality-specific-files/physiological-recordings.md"
"04-modality-specific-files/07-behavioral-experiments.md": "modality-specific-files/behavioral-experiments.md"
"04-modality-specific-files/08-genetic-descriptor.md": "modality-specific-files/genetic-descriptor.md"
"04-modality-specific-files/09-positron-emission-tomography.md": "modality-specific-files/positron-emission-tomography.md"
"04-modality-specific-files/10-microscopy.md": "modality-specific-files/microscopy.md"
"04-modality-specific-files/11-near-infrared-spectroscopy.md": "modality-specific-files/near-infrared-spectroscopy.md"
"05-derivatives/01-introduction.md": "derivatives/introduction.md"
"05-derivatives/02-common-data-types.md": "derivatives/common-data-types.md"
"05-derivatives/03-imaging.md": "derivatives/imaging.md"
"06-longitudinal-and-multi-site-studies.md": "longitudinal-and-multi-site-studies.md"
"07-extensions.md": "extensions.md"
"99-appendices/14-glossary.md": "glossary.md"
"99-appendices/01-contributors.md": "appendices/contributors.md"
"99-appendices/02-licenses.md": "appendices/licenses.md"
"99-appendices/03-hed.md": "appendices/hed.md"
"99-appendices/04-entity-table.md": "appendices/entity-table.md"
"99-appendices/05-units.md": "appendices/units.md"
"99-appendices/06-meg-file-formats.md": "appendices/meg-file-formats.md"
"99-appendices/07-meg-systems.md": "appendices/meg-systems.md"
"99-appendices/08-coordinate-systems.md": "appendices/coordinate-systems.md"
"99-appendices/09-entities.md": "appendices/entities.md"
"99-appendices/10-file-collections.md": "appendices/file-collections.md"
"99-appendices/11-qmri.md": "appendices/qmri.md"
"99-appendices/12-arterial-spin-labeling.md": "appendices/arterial-spin-labeling.md"
"99-appendices/13-cross-modality-correspondence.md": "appendices/cross-modality-correspondence.md"
docs_dir: "src"
use_directory_urls: false