[KeepUpdating] Documenting code in scripts/make_figures.py

[wingedRuslan]

Documenting which parts do and do not work in scripts/make_figures.py

Mark when solved:

• 1) plot_rich_club - is explained in issue rich_club function not defined as expected #114 . Can't reproduce the required input rc_rand for the function;
• 2) plot_degree_dist - the output is not as expected.

Output of running

• 3) plot_network_measures - does not run

Error

TypeError                                 Traceback (most recent call last)
<ipython-input-22-3ab1aaca8322> in <module>()
----> 1 plot_network_measures(global_measures)

~/anaconda3/lib/python3.6/site-packages/scona/scripts/make_figures.py in plot_network_measures(measure_dict, ax, figure_name, y_max, y_min, color)
    181                 'C', 'C_rand',
    182                 'L', 'L_rand',
--> 183                 'sigma', 'sigma_rand']]
    184 
    185     if not ax:

TypeError: unhashable type: 'list'

Code referenced in the error

    df = df[['a', 'a_rand',
                'M', 'M_rand',
                'E', 'E_rand',
                'C', 'C_rand',
                'L', 'L_rand',
                'sigma', 'sigma_rand']]

My guess: the network measures calculation code was refactored, e.g. random values were removed, so the plotting function needs to be accordingly refactored.

The objective of 3 above-mentioned functions is displayed in issue #1

• 4) plot_sagittal_network - does not run, addressed in [KeepUpdating] Help to understand parameters #115