Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Contributing more visualizations #32

Open
lrq3000 opened this issue Feb 8, 2018 · 1 comment
Open

Contributing more visualizations #32

lrq3000 opened this issue Feb 8, 2018 · 1 comment

Comments

@lrq3000
Copy link

lrq3000 commented Feb 8, 2018

Hi there,

I just found your repository out of sheer luck. I have made similar visualization scripts for my own needs, maybe this can be merged in this repo?

https://github.com/lrq3000/neuro-python-plotting

There is some overlap with what you made here, but there are two notable differences:
1- my scripts focus on plotting a lot of maps on a single image, on a grid, to summarize the results. For example, plot_correl_maps_overview.ipynb is similar to #7 but can plot more than one result, for example it can plot multiple conditions and contrasts on a 2D grid, with shared colorbar to ease comparison.
2- I made another type of visualization that is not available here, the barplotwithsamples.ipynb notebook, which plots the effect sizes per group and per cluster. It can also automatically detect the clusters center coordinates and atlas regions names, and color them on an atlas and on the bar plots accordingly, which is a lot more readable than a legend. Example: https://github.com/lrq3000/neuro-python-plotting/blob/master/README.md

Note: some notebooks are not yet illustrated in the readme, because I will first publish the figures in my next paper before using them as examples :-)

@KirstieJane
Copy link
Member

KirstieJane commented Feb 14, 2018

Hi @lrq3000!! I'm so sorry for my slow reply! I'm delighted that you found the repo and it would be wonderful to merge your scripts ✨ ✨ ✨

As you've probably noticed, the repo isn't upto date (in fact some of the documentation is coming up to 2 years old 😱) but I'm still very much on board with adding code and developing it. The best way to ask questions is in the (newly created) gitter room: https://gitter.im/WhitakerLab/BrainsForPublication. Ping me there and we can chat about where to put your code!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants