Not displaying correctly with lots of data

[josiegleeson]

Hello,

I have been loving this package, it is a fantastic way to visualise data. However, I think I might have some datasets that are too big to be shown?

It works perfectly on my individual dataset, but then on the combined it doesn't. (1000 points VS around 9000). I also want to create one with about 3.8mil points... not sure if this is possible?

I'll show what happens when I generate the plots. Thank you.

[pog87]

Hi @josiegleeson, thanks for using our package. Which language are you using? Could please you provide some reproducible example of your issue along with the code?

[josiegleeson]

Hi,
Sure. I have attached the data set (csv saved as txt) I am using and this is the code I am using to run it in R.
Thanks for your help.

library(cowplot)
library(dplyr)
library(readr)
library(plotly)
source("R_rainclouds.R")

Import data set with excel #N/As and remove

seqs <- read.csv(file = "sequins_simple.csv", header = TRUE, na.strings="#N/A")
seqs <- na.omit(seqs)

Put different lengths into groups and factor

seqs$knownTranscriptLength <- cut(seqs$knownTranscriptLength, breaks=c(0,500,1000,1500,2000,7000), right=FALSE, dig.lab = 5)
seqs$knownTranscriptLength <- as.factor(seqs$knownTranscriptLength)

Want it all to be one colour across every length

seqs$constant = 1

p <- ggplot(seqs,aes(x=knownTranscriptLength,y=coverage, fill=constant))+
geom_flat_violin(position = position_nudge(x = .2, y = 0), adjust = 2, fill = "#AF7AC5", color="black")+
geom_point(position = position_jitter(width = .15), size = .25, color="#AF7AC5")+
ylab('Coverage')+xlab('Annotated Transcript Length')+theme_cowplot()+guides(fill = FALSE)
p

ggsave('sequins-s.png')

sequins_simple.txt

[josiegleeson]

Hello,

Is there any update on this issue? I'd really like to include the raincloud plots in the study.

Thanks.

[pog87]

Hi, I've just pinged the R experts for your issue. I hope they'll find a solution.