DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis
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Updated
Jul 14, 2022 - Python
DiVA (DNA Variant Analysis) is a pipeline for Next-Generation Sequencing Exome data anlysis
Python wrapper and web-server for Ensembl VEP
WES Analysis scripts for "Immune determinants of response to neoadjuvant chemo-radiation in esophageal adenocarcinoma" publication
A chamada de variantes envolve a identificação de polimorfismos de nucleotídeo único (SNPs) e pequenas inserções e deleções (indels) em dados de Sequenciamento de Nova Geração (NGS). Nesta pipeline descrevo a detecção de SNP para identificação de possíveis alterações de aminoácidos em proteínas virais.
neural networks to score PubMed search results for similarity to evidence abstracts from ClinVar or CIViC
A command line tool for predicting gene expression using genotypic data
interactive variant tables for easy filtering
This is a public repo to introduce Omni and collect issues and feedback.
Customized vcf_melt script from pyvcf. Handles snpEff-annotated vcf files
Repository for miscellaneous bioinformatics scripts that may be useful to others.
PyGeneBe: A Python client seamlessly integrating with the GeneBe platform, offering efficient annotation of genetic variants through its API, while supporting pandas, VCF file formats, and HGVS parsing
Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)
An empirical variant annotation and data evaluation pipeline.
A relational database stores per sample based sequencing data.
Variant annotation and filtration server ALAPY Genome Explorer
This repository contains an analysis pipeline developed to characterize WGS output
A Snakemake workflow for variant calling using GATK4 best practices
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
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