A collection of web tools for biologists
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Updated
Jul 30, 2017 - Python
A collection of web tools for biologists
A flexible variant annotator written in Python
a core part of the MiModD package for use as a library
Manuscript data and code repository
A repository for all code related to my masters project
Workflow for biological validation of germline SNP and indel variant datasets.
Calculate SMD and Hamming and Jaccard distances between each pair of samples in a set of variant files.
Novel mutations are identified in leukemia through variant analysis.
A command line tool for predicting gene expression using genotypic data
Bioinformatics pipelines developed while working at the dept of Obs & Gynae
Skeleton for NGS pipeline, now backbone of OVAS project
bcftools for dealing with bcf files.
Tools for analyzing UMIErrorCorrect output
Management flow using PBS system to analyze sequencing data from Illumina Novaseq6000
R package containing a R Shiny app for somatic genomic variants interpretation and a tool suite to deal with an underlying local structured database.
a workflow for combining variant calls from SNV analyses done with different callers
Protein folding on VKGL data using FoldX and AlphaFold2
Several bioinformatics projects: sequence alignment, machine learning, GUI development, etc.
R package containing a R Shiny app for germline genomic variants interpretation, and a tool suite to deal with an underlying local structured database.
A Latch Bio workflow to call DNA sequence variants
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