snp
Here are 109 public repositories matching this topic...
Python wrapper and web-server for Ensembl VEP
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Apr 20, 2017 - Python
Galaxy For Life Science - SNiPlay
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Aug 24, 2018 - C++
Step-by-step approach in the analysis of SARS-CoV-2 cDNA from raw reads using fastqc, trimmomatic, bwa, vcftools.
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Jul 11, 2022
Wrapper scripts for TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) and UNEAK (Universal Network Enabled Analysis Kit) v3.0 Genotyping by Sequencing (GBS) analysis pipelines
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Mar 14, 2024 - Shell
Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
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May 26, 2019 - Shell
Counts all SNP mutations in .map file
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May 9, 2021 - Python
The goal of this analysis is to explore the machine learning-based automatic diagnosis of colorectal patients based on the single nucleotide polymorphisms (SNP). Such a computational approach may be used complementary to other diagnosis tools, such as, biopsy, CT scan, and MRI. Moreover, it may be used as a low-cost screening for colorectal cancers
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Nov 2, 2022 - Jupyter Notebook
Web-приложение для отрисовки данных, обработанных с помощью yMapper'а.
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Apr 21, 2024 - JavaScript
GWAS third-level epistatic search tool for cluster architectures
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Mar 18, 2020 - C++
Docker based on bioconda distribution (v.1.23), with fixed memory issue
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May 14, 2020 - Dockerfile
utility scripts for metagenomics, RNAseq etc. reads processing.
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Jan 10, 2018 - Python
Linkage disequilibrium test tool to analyse all non-monomorphic single nucleotide polymorphisms
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Dec 1, 2018 - Perl
Calling SNPs using TASSEL GBS V2 pipeline for ponderosa pine using the reference genome of loblolly pine
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Feb 20, 2020 - Shell
Workflow for biological validation of germline SNP and indel variant datasets.
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Jul 29, 2022 - Shell
SNP(VCF format) data preprocessing for GWAS disease prediction
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Mar 23, 2023 - Shell
RADtyping: a user-defined perl procedure for performing de novo RAD genotyping in mapping populations.
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Apr 25, 2017 - Perl
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Apr 5, 2019 - HTML
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